Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RNU6-362P-201ENST00000516736 90 ntBASIC4.46□□□□□ -1.7
VPS39Q96JC1 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS39Q96JC1 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS39Q96JC1 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS39Q96JC1 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS39Q96JC1 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS39Q96JC1 AC239803.2-201ENST00000610161 430 ntBASIC4.46□□□□□ -1.7
VPS39Q96JC1 AC024023.1-201ENST00000624530 922 ntBASIC4.46□□□□□ -1.7
VPS39Q96JC1 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS39Q96JC1 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS39Q96JC1 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS39Q96JC1 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
VPS39Q96JC1 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS39Q96JC1 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS39Q96JC1 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
VPS39Q96JC1 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VPS39Q96JC1 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS39Q96JC1 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS39Q96JC1 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS39Q96JC1 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS39Q96JC1 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 MIR659-201ENST00000384963 97 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 CCNB2P1-201ENST00000399411 1150 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 GLULP6-201ENST00000399502 913 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 VN1R8P-201ENST00000407739 893 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 AC010385.1-201ENST00000412374 256 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 AL590762.4-201ENST00000425885 253 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 AC073335.1-201ENST00000427776 363 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 AL049745.1-201ENST00000433953 286 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 AC023347.2-201ENST00000433994 462 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 AC008072.1-201ENST00000434254 824 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 LYPLA1P1-201ENST00000434514 622 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 MTND2P21-201ENST00000436242 1042 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 AC011753.3-201ENST00000443436 406 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 TPTE2P6-202ENST00000445572 1007 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 RPL23AP43-201ENST00000446445 471 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 AC006967.1-201ENST00000467608 589 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 RPS26P28-201ENST00000470806 348 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 AL161747.1-201ENST00000480068 358 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 AC083982.1-201ENST00000485679 344 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 AC104687.1-201ENST00000485829 412 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS39Q96JC1 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS39Q96JC1 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 RPL23AP97-201ENST00000568955 471 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 MTND6P33-201ENST00000571794 183 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS39Q96JC1 AP003117.2-201ENST00000606010 545 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 Z98200.1-201ENST00000607298 470 ntBASIC4.45□□□□□ -1.7
VPS39Q96JC1 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS39Q96JC1 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS39Q96JC1 MTCO1P14-201ENST00000441695 1559 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.44□□□□□ -1.7
VPS39Q96JC1 RNU1-108P-201ENST00000362556 161 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 RNA5SP87-201ENST00000384155 118 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 LAP3P1-201ENST00000403648 294 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS39Q96JC1 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 ELOCP6-201ENST00000429066 328 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 RPEP2-201ENST00000432149 701 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS39Q96JC1 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 RPL36AP15-201ENST00000444514 266 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 AL162591.2-201ENST00000449634 317 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 ELOCP12-201ENST00000458706 328 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 AC012170.1-201ENST00000495139 359 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 OR7H2P-201ENST00000513483 306 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms