Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 AC117529.2-201ENST00000512159 2068 ntBASIC2.4□□□□□ -2.03
LINC00643Q86TS7 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.03
LINC00643Q86TS7 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC007256.1-201ENST00000392253 2765 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC093908.1-201ENST00000623125 8092 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 U3.11-201ENST00000364476 212 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 RNA5SP235-201ENST00000365411 114 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AL031121.1-201ENST00000406553 254 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 RN7SKP58-201ENST00000411010 305 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 RNA5SP344-201ENST00000411081 104 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 NPM1P4-201ENST00000414095 812 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 BMS1P22-201ENST00000414726 313 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 BMS1P13-201ENST00000417301 885 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 RPL7AP25-201ENST00000423357 805 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC093151.1-201ENST00000427711 313 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 HMGN1P32-201ENST00000441744 256 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AL353803.3-201ENST00000444641 335 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 RPL23AP81-201ENST00000455252 467 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC005726.1-201ENST00000494679 427 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 RPL29P14-201ENST00000495837 428 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 MRPS33P2-201ENST00000507850 322 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 IGHVIII-38-1-201ENST00000521454 282 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 IGHVII-49-1-201ENST00000521760 224 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 MTND1P6-201ENST00000523621 946 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AP006437.1-202ENST00000530327 933 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC079905.1-201ENST00000549280 475 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC079600.1-201ENST00000550326 297 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC105129.1-201ENST00000560250 297 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC002310.3-201ENST00000569728 723 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC034268.2-201ENST00000571784 482 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC087292.1-201ENST00000573371 512 ntTSL 5 BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 MIR4262-201ENST00000578394 54 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 SNORD39.2-201ENST00000579995 76 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 KPNA2P3-201ENST00000584190 848 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC079587.1-201ENST00000603846 277 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC092354.2-201ENST00000607786 514 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AL451074.6-201ENST00000608512 729 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 MIR6776-201ENST00000616678 59 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 TEX41-280ENST00000629185 591 ntTSL 5 BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC004972.1-201ENST00000623934 2209 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 AC007823.1-201ENST00000569932 1566 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 FAM35CP-201ENST00000554755 2470 ntBASIC2.39□□□□□ -2.03
LINC00643Q86TS7 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 SNORD56.3-201ENST00000363507 71 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 SNORD35B-201ENST00000363660 87 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 RN7SKP280-201ENST00000364196 304 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 RNA5SP366-201ENST00000365454 123 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 RNA5SP87-201ENST00000384155 118 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 RBBP4P5-201ENST00000398583 1266 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AL034403.1-201ENST00000399414 885 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AP002530.1-201ENST00000405705 684 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AL133260.1-201ENST00000405720 405 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 RPL7AP73-201ENST00000413490 353 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 Z93930.2-202ENST00000418292 208 ntTSL 3 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 HNRNPA3P4-201ENST00000427514 803 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 MTCO1P43-201ENST00000431831 488 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 CYCSP11-201ENST00000436426 315 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 RPL7P11-201ENST00000437586 658 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC092013.1-201ENST00000438795 332 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC007790.1-201ENST00000439081 782 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 RPS17P13-201ENST00000448974 407 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.38□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 157.7 ms