Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 ZNF29P-201ENST00000225587 168 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 METTL21EP-201ENST00000298105 713 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 ENSAP3-201ENST00000312710 333 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 RNA5SP335-201ENST00000363817 110 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 RNU6-317P-201ENST00000384031 107 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 HSPA8P15-201ENST00000401676 786 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 DNAJC19P6-201ENST00000401853 280 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 MTCO2P8-201ENST00000412213 658 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC119751.6-201ENST00000416712 186 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 CDY14P-201ENST00000431260 1014 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 RPS24P8-201ENST00000431490 402 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 PPIAP13-201ENST00000434706 478 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AL031663.1-201ENST00000437445 219 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 CDY12P-201ENST00000440679 1015 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 CDY13P-201ENST00000445813 1015 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 MRPL35P2-201ENST00000448009 511 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 CDY23P-201ENST00000451661 1014 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 snoU13.20-201ENST00000459180 104 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 RNA5SP103-201ENST00000459503 118 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 RPL7AP28-201ENST00000464513 571 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 RN7SL189P-201ENST00000468631 289 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 RPL7P40-201ENST00000481703 745 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC008565.1-201ENST00000509046 885 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC105031.1-201ENST00000518550 476 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC083923.1-201ENST00000523708 376 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AP002812.4-201ENST00000532139 286 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC024940.3-201ENST00000538551 316 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC006518.2-201ENST00000542513 940 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC023824.3-201ENST00000569003 562 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC000068.2-201ENST00000608816 460 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC093673.2-201ENST00000609674 331 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 FRG1HP-204ENST00000617940 757 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC024595.1-201ENST00000623088 387 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC027290.2-201ENST00000623210 18662 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AL133268.1-201ENST00000405676 1401 ntBASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.21□□□□□ -1.74
PDLIM3Q53GG5 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 AC007390.2-201ENST00000606229 3803 ntBASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 SNORA16A-201ENST00000384342 137 ntBASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 MIR525-201ENST00000384978 85 ntBASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 RPL7P27-201ENST00000403775 720 ntBASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 TAF13P2-201ENST00000416876 286 ntBASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 AC106883.1-201ENST00000418805 562 ntBASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 RPL18P10-201ENST00000425606 538 ntBASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 RSL24D1P6-201ENST00000426934 401 ntBASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 CNOT7P1-201ENST00000429006 852 ntBASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 CBX1P4-201ENST00000439415 457 ntBASIC4.2□□□□□ -1.74
PDLIM3Q53GG5 CDC27P1-201ENST00000445384 715 ntBASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms