Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC092111.2-201ENST00000611627 1414 ntBASIC5.48□□□□□ -1.53
HOXC9P31274 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXC9P31274 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC9P31274 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC9P31274 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC9P31274 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC9P31274 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXC9P31274 PROS2P-201ENST00000474651 1951 ntBASIC5.48□□□□□ -1.53
HOXC9P31274 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
HOXC9P31274 AC009501.3-201ENST00000605001 1352 ntBASIC5.48□□□□□ -1.53
HOXC9P31274 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
HOXC9P31274 5S_rRNA.1-201ENST00000364415 116 ntBASIC5.48□□□□□ -1.53
HOXC9P31274 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
HOXC9P31274 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.48□□□□□ -1.53
HOXC9P31274 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC5.48□□□□□ -1.53
HOXC9P31274 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC5.48□□□□□ -1.53
HOXC9P31274 RBMY1KP-201ENST00000423480 476 ntBASIC5.48□□□□□ -1.53
HOXC9P31274 RPS6P14-201ENST00000425165 719 ntBASIC5.48□□□□□ -1.53
HOXC9P31274 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC9P31274 AC074367.1-201ENST00000438685 1125 ntBASIC5.48□□□□□ -1.53
HOXC9P31274 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC5.48□□□□□ -1.53
HOXC9P31274 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC5.48□□□□□ -1.53
HOXC9P31274 AL133547.1-201ENST00000448546 220 ntBASIC5.48□□□□□ -1.53
HOXC9P31274 snoU13.22-201ENST00000459428 104 ntBASIC5.48□□□□□ -1.53
HOXC9P31274 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC5.48□□□□□ -1.53
HOXC9P31274 MTND3P3-201ENST00000505004 126 ntBASIC5.48□□□□□ -1.53
HOXC9P31274 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.48□□□□□ -1.53
HOXC9P31274 AC112206.4-201ENST00000515142 405 ntBASIC5.48□□□□□ -1.53
HOXC9P31274 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC5.48□□□□□ -1.53
HOXC9P31274 AP003049.1-201ENST00000529418 457 ntBASIC5.48□□□□□ -1.53
HOXC9P31274 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC5.48□□□□□ -1.53
HOXC9P31274 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC5.48□□□□□ -1.53
HOXC9P31274 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC9P31274 AC098483.2-201ENST00000603158 454 ntBASIC5.48□□□□□ -1.53
HOXC9P31274 AL671309.1-201ENST00000603750 544 ntBASIC5.48□□□□□ -1.53
HOXC9P31274 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.48□□□□□ -1.53
HOXC9P31274 AC015922.4-201ENST00000612568 690 ntBASIC5.48□□□□□ -1.53
HOXC9P31274 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC9P31274 PACRG-211ENST00000621363 360 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXC9P31274 AC015722.2-201ENST00000622210 551 ntBASIC5.48□□□□□ -1.53
HOXC9P31274 AL354798.1-201ENST00000622505 329 ntBASIC5.48□□□□□ -1.53
HOXC9P31274 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC5.48□□□□□ -1.53
HOXC9P31274 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC9P31274 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC5.48□□□□□ -1.53
HOXC9P31274 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
HOXC9P31274 ERCC6-202ENST00000374127 1782 ntBASIC5.47□□□□□ -1.53
HOXC9P31274 AC105074.1-201ENST00000623380 3095 ntBASIC5.47□□□□□ -1.53
HOXC9P31274 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.47□□□□□ -1.53
HOXC9P31274 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5.47□□□□□ -1.53
HOXC9P31274 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXC9P31274 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXC9P31274 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXC9P31274 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC5.47□□□□□ -1.53
HOXC9P31274 RNA5SP44-201ENST00000410446 133 ntBASIC5.47□□□□□ -1.53
HOXC9P31274 OR5BE1P-201ENST00000425977 939 ntBASIC5.47□□□□□ -1.53
HOXC9P31274 AL358472.1-201ENST00000431295 329 ntBASIC5.47□□□□□ -1.53
HOXC9P31274 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.47□□□□□ -1.53
HOXC9P31274 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXC9P31274 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC5.47□□□□□ -1.53
HOXC9P31274 RPS11P1-201ENST00000451072 473 ntBASIC5.47□□□□□ -1.53
HOXC9P31274 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC5.47□□□□□ -1.53
HOXC9P31274 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC5.47□□□□□ -1.53
HOXC9P31274 PHBP17-201ENST00000528576 541 ntBASIC5.47□□□□□ -1.53
HOXC9P31274 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.47□□□□□ -1.53
HOXC9P31274 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC5.47□□□□□ -1.53
HOXC9P31274 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC5.47□□□□□ -1.53
HOXC9P31274 AL592436.1-201ENST00000605135 558 ntBASIC5.47□□□□□ -1.53
HOXC9P31274 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC5.47□□□□□ -1.53
HOXC9P31274 AL121772.2-201ENST00000614331 297 ntBASIC5.47□□□□□ -1.53
HOXC9P31274 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.47□□□□□ -1.53
HOXC9P31274 DLEU1_1.1-201ENST00000618107 190 ntBASIC5.47□□□□□ -1.53
HOXC9P31274 AC253576.2-201ENST00000618815 580 ntBASIC5.47□□□□□ -1.53
HOXC9P31274 MIR6075-201ENST00000620782 95 ntBASIC5.47□□□□□ -1.53
HOXC9P31274 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC5.47□□□□□ -1.53
HOXC9P31274 CR392039.5-201ENST00000623201 510 ntBASIC5.47□□□□□ -1.53
HOXC9P31274 OR5BE1P-202ENST00000641168 1176 ntBASIC5.47□□□□□ -1.53
HOXC9P31274 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.47□□□□□ -1.53
HOXC9P31274 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXC9P31274 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
HOXC9P31274 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
HOXC9P31274 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.47□□□□□ -1.53
HOXC9P31274 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
HOXC9P31274 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.53
HOXC9P31274 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.53
HOXC9P31274 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
HOXC9P31274 TCP11X1-202ENST00000622971 1372 ntBASIC5.46□□□□□ -1.54
HOXC9P31274 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC5.46□□□□□ -1.54
HOXC9P31274 AC073464.3-201ENST00000422564 712 ntBASIC5.46□□□□□ -1.54
HOXC9P31274 RPL37P1-201ENST00000432310 284 ntBASIC5.46□□□□□ -1.54
HOXC9P31274 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC5.46□□□□□ -1.54
HOXC9P31274 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC5.46□□□□□ -1.54
HOXC9P31274 EIF2S2P5-201ENST00000457635 968 ntBASIC5.46□□□□□ -1.54
HOXC9P31274 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC5.46□□□□□ -1.54
HOXC9P31274 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.46□□□□□ -1.54
HOXC9P31274 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC5.46□□□□□ -1.54
HOXC9P31274 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC5.46□□□□□ -1.54
HOXC9P31274 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC5.46□□□□□ -1.54
HOXC9P31274 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC5.46□□□□□ -1.54
HOXC9P31274 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC5.46□□□□□ -1.54
HOXC9P31274 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms