Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
HMGB1P09429 CASC19-261ENST00000641853 1638 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 SUCLA2P2-201ENST00000417269 1309 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 MTND4P9-201ENST00000507819 1346 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
HMGB1P09429 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC6.16□□□□□ -1.42
HMGB1P09429 AC025031.4-201ENST00000621248 3271 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC6.15□□□□□ -1.42
HMGB1P09429 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC6.15□□□□□ -1.42
HMGB1P09429 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
HMGB1P09429 DBF4P1-201ENST00000412976 1892 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.42
HMGB1P09429 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
HMGB1P09429 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
HMGB1P09429 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
HMGB1P09429 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
HMGB1P09429 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
HMGB1P09429 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
HMGB1P09429 MIR620-201ENST00000385232 95 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 BOLA3P4-201ENST00000418151 400 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC6.15□□□□□ -1.42
HMGB1P09429 AC108075.1-201ENST00000424692 529 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 FAR2P4-202ENST00000425399 584 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 AL035410.1-201ENST00000427409 427 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
HMGB1P09429 AL391987.1-201ENST00000441025 200 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 AC104073.1-201ENST00000451988 151 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 OR2AF1P-201ENST00000454899 889 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC6.15□□□□□ -1.42
HMGB1P09429 RPL6P9-201ENST00000466502 859 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 RN7SL101P-201ENST00000496350 279 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 AC084024.2-201ENST00000503480 791 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC6.15□□□□□ -1.42
HMGB1P09429 MYL12BP2-201ENST00000503948 512 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC6.15□□□□□ -1.42
HMGB1P09429 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC6.15□□□□□ -1.42
HMGB1P09429 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
HMGB1P09429 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC6.15□□□□□ -1.42
HMGB1P09429 AC127024.5-201ENST00000580085 462 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 GMFG-202ENST00000594700 397 ntTSL 2 BASIC6.15□□□□□ -1.42
HMGB1P09429 AL022067.1-201ENST00000602426 454 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 AL606834.3-201ENST00000602615 496 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 AC096947.1-201ENST00000603233 470 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC6.15□□□□□ -1.42
HMGB1P09429 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC6.15□□□□□ -1.42
HMGB1P09429 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC6.15□□□□□ -1.42
HMGB1P09429 AC099654.8-201ENST00000637757 681 ntBASIC6.15□□□□□ -1.42
HMGB1P09429 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
HMGB1P09429 AC000367.1-201ENST00000452711 1766 ntBASIC6.15□□□□□ -1.43
HMGB1P09429 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC6.15□□□□□ -1.43
HMGB1P09429 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
HMGB1P09429 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC6.15□□□□□ -1.43
HMGB1P09429 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.43
HMGB1P09429 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
HMGB1P09429 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
HMGB1P09429 SALL4P2-201ENST00000423288 2910 ntBASIC6.15□□□□□ -1.43
HMGB1P09429 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
HMGB1P09429 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HMGB1P09429 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
HMGB1P09429 XIAPP3-201ENST00000312918 795 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 RNU6-1066P-201ENST00000363573 105 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 RNU1-130P-201ENST00000363930 160 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC6.14□□□□□ -1.43
HMGB1P09429 RNU6-224P-201ENST00000384055 107 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 AL390316.1-201ENST00000406279 553 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 MIR1182-201ENST00000408363 97 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 RN7SKP206-201ENST00000410823 293 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 RNU4-78P-201ENST00000410940 126 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 NPM1P4-201ENST00000414095 812 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC6.14□□□□□ -1.43
HMGB1P09429 SLC35E1P1-201ENST00000419313 864 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 CFL1P1-202ENST00000432948 411 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC6.14□□□□□ -1.43
HMGB1P09429 AC011225.1-201ENST00000457751 369 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 AC021660.1-201ENST00000465006 554 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 OR2AO1P-201ENST00000476497 403 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 RPS21P4-201ENST00000487122 248 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HMGB1P09429 AC078817.1-201ENST00000492623 435 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 PGAM1P13-201ENST00000507497 754 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 RN7SKP116-201ENST00000516902 319 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC6.14□□□□□ -1.43
HMGB1P09429 AC010376.1-201ENST00000522101 334 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 ARL2BPP5-201ENST00000523141 481 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 AP001317.1-201ENST00000531194 960 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC6.14□□□□□ -1.43
HMGB1P09429 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC6.14□□□□□ -1.43
HMGB1P09429 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC6.14□□□□□ -1.43
HMGB1P09429 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC6.14□□□□□ -1.43
HMGB1P09429 IGHV3-29-201ENST00000604817 344 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 AC112220.2-201ENST00000605513 533 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 AC018695.5-201ENST00000605872 315 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC6.14□□□□□ -1.43
HMGB1P09429 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC6.14□□□□□ -1.43
HMGB1P09429 AC109309.2-201ENST00000612597 332 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 AL354976.1-201ENST00000613843 387 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 AP003485.1-201ENST00000625093 753 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC6.14□□□□□ -1.43
HMGB1P09429 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC6.14□□□□□ -1.43
HMGB1P09429 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms