Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
COL3A1P02461 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL3A1P02461 SKINT1L-201ENST00000401057 817 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 RNU6-648P-201ENST00000410190 107 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.66□□□□□ -1.5
COL3A1P02461 AL031779.1-201ENST00000415663 330 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 AL590806.1-201ENST00000415818 853 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL3A1P02461 RPS6P15-201ENST00000431996 751 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 RPL7P34-201ENST00000433316 712 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 MAPRE1P3-201ENST00000435438 796 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 AC069540.1-201ENST00000446320 988 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC5.66□□□□□ -1.5
COL3A1P02461 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.66□□□□□ -1.5
COL3A1P02461 AC079804.1-201ENST00000461922 436 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 AC104164.3-201ENST00000467363 1258 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 WDR78-207ENST00000488333 613 ntTSL 3 BASIC5.66□□□□□ -1.5
COL3A1P02461 AP000563.1-201ENST00000490865 758 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC5.66□□□□□ -1.5
COL3A1P02461 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.66□□□□□ -1.5
COL3A1P02461 BNIP3P41-201ENST00000503774 571 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.66□□□□□ -1.5
COL3A1P02461 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC5.66□□□□□ -1.5
COL3A1P02461 RNU6-513P-201ENST00000516104 104 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC5.66□□□□□ -1.5
COL3A1P02461 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC5.66□□□□□ -1.5
COL3A1P02461 NPM1P6-201ENST00000521088 871 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 AC100770.1-201ENST00000532310 322 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL3A1P02461 OSBPL9P5-201ENST00000542581 171 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC5.66□□□□□ -1.5
COL3A1P02461 AL442163.2-201ENST00000553912 710 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.66□□□□□ -1.5
COL3A1P02461 MIR4509-3-201ENST00000578671 94 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 MIR4509-2-201ENST00000583920 94 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC5.66□□□□□ -1.5
COL3A1P02461 AL133507.1-201ENST00000605269 557 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL3A1P02461 AC023509.5-201ENST00000617434 807 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 MIR4509-1-201ENST00000618224 94 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 AL445493.3-201ENST00000619568 477 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 AL590396.4-201ENST00000636779 956 ntBASIC5.66□□□□□ -1.5
COL3A1P02461 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL3A1P02461 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL3A1P02461 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL3A1P02461 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
COL3A1P02461 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC5.66□□□□□ -1.5
COL3A1P02461 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL3A1P02461 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL3A1P02461 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
COL3A1P02461 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.65□□□□□ -1.5
COL3A1P02461 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.65□□□□□ -1.5
COL3A1P02461 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL3A1P02461 CD2-201ENST00000369477 478 ntTSL 2 BASIC5.65□□□□□ -1.5
COL3A1P02461 RPL6P29-201ENST00000414863 865 ntBASIC5.65□□□□□ -1.5
COL3A1P02461 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.65□□□□□ -1.5
COL3A1P02461 RPL17P36-201ENST00000420302 549 ntBASIC5.65□□□□□ -1.5
COL3A1P02461 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.65□□□□□ -1.5
COL3A1P02461 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.65□□□□□ -1.5
COL3A1P02461 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC5.65□□□□□ -1.5
COL3A1P02461 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC5.65□□□□□ -1.5
COL3A1P02461 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC5.65□□□□□ -1.5
COL3A1P02461 HGF-207ENST00000453018 721 ntTSL 3 BASIC5.65□□□□□ -1.5
COL3A1P02461 USP9YP10-201ENST00000454868 628 ntBASIC5.65□□□□□ -1.5
COL3A1P02461 RPL23AP81-201ENST00000455252 467 ntBASIC5.65□□□□□ -1.5
COL3A1P02461 CREM-230ENST00000474931 626 ntTSL 2 BASIC5.65□□□□□ -1.5
COL3A1P02461 AC108022.1-201ENST00000493466 478 ntBASIC5.65□□□□□ -1.5
COL3A1P02461 AC113398.2-201ENST00000507630 558 ntBASIC5.65□□□□□ -1.5
COL3A1P02461 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC5.65□□□□□ -1.5
COL3A1P02461 USP9YP5-201ENST00000511770 630 ntBASIC5.65□□□□□ -1.5
COL3A1P02461 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL3A1P02461 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC5.65□□□□□ -1.5
COL3A1P02461 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC5.65□□□□□ -1.5
COL3A1P02461 AC090425.2-201ENST00000608818 501 ntBASIC5.65□□□□□ -1.5
COL3A1P02461 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC5.65□□□□□ -1.5
COL3A1P02461 MIR8084-201ENST00000614105 89 ntBASIC5.65□□□□□ -1.5
COL3A1P02461 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC5.65□□□□□ -1.5
COL3A1P02461 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC5.65□□□□□ -1.5
COL3A1P02461 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
COL3A1P02461 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC5.65□□□□□ -1.5
COL3A1P02461 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC5.65□□□□□ -1.5
COL3A1P02461 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL3A1P02461 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL3A1P02461 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
COL3A1P02461 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL3A1P02461 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
COL3A1P02461 SNORA70C-201ENST00000384538 135 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 RPL22P22-201ENST00000395439 379 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 ATP5F1P2-201ENST00000398143 760 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC5.64□□□□□ -1.51
COL3A1P02461 GLS-203ENST00000409215 632 ntTSL 4 BASIC5.64□□□□□ -1.51
COL3A1P02461 AL121878.1-201ENST00000418638 859 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC5.64□□□□□ -1.51
COL3A1P02461 Y_RNA.655-201ENST00000515919 96 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC5.64□□□□□ -1.51
COL3A1P02461 C1DP5-201ENST00000525775 383 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
COL3A1P02461 AC007834.2-201ENST00000536310 343 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.64□□□□□ -1.51
COL3A1P02461 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms