Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC42Q96M95 SNORA60-201ENST00000362396 134 ntBASIC4.33□□□□□ -1.72
CCDC42Q96M95 RNA5SP322-201ENST00000363617 119 ntBASIC4.33□□□□□ -1.72
CCDC42Q96M95 RNA5SP447-201ENST00000363749 119 ntBASIC4.33□□□□□ -1.72
CCDC42Q96M95 RNA5SP505-201ENST00000364748 108 ntBASIC4.33□□□□□ -1.72
CCDC42Q96M95 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC42Q96M95 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC42Q96M95 AC011933.1-201ENST00000413334 321 ntBASIC4.33□□□□□ -1.72
CCDC42Q96M95 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC42Q96M95 AC093698.1-201ENST00000423843 571 ntBASIC4.33□□□□□ -1.72
CCDC42Q96M95 RWDD4P2-201ENST00000426392 563 ntBASIC4.33□□□□□ -1.72
CCDC42Q96M95 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC42Q96M95 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC42Q96M95 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC42Q96M95 TXNP2-201ENST00000443918 295 ntBASIC4.33□□□□□ -1.72
CCDC42Q96M95 Z95152.1-201ENST00000453556 656 ntBASIC4.33□□□□□ -1.72
CCDC42Q96M95 AC116533.1-201ENST00000459748 321 ntBASIC4.33□□□□□ -1.72
CCDC42Q96M95 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC42Q96M95 RWDD4P1-201ENST00000488019 565 ntBASIC4.33□□□□□ -1.72
CCDC42Q96M95 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC42Q96M95 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC42Q96M95 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC42Q96M95 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC42Q96M95 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC42Q96M95 RFPL1S-203ENST00000539579 330 ntBASIC4.33□□□□□ -1.72
CCDC42Q96M95 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC42Q96M95 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC42Q96M95 AC100827.5-201ENST00000615883 426 ntBASIC4.33□□□□□ -1.72
CCDC42Q96M95 MIR7703-201ENST00000620784 77 ntBASIC4.33□□□□□ -1.72
CCDC42Q96M95 AC124312.6-202ENST00000623624 418 ntBASIC4.33□□□□□ -1.72
CCDC42Q96M95 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC42Q96M95 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC42Q96M95 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC42Q96M95 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC42Q96M95 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
CCDC42Q96M95 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC42Q96M95 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
CCDC42Q96M95 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC42Q96M95 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC42Q96M95 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC42Q96M95 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC42Q96M95 AC103591.2-201ENST00000265259 766 ntBASIC4.32□□□□□ -1.72
CCDC42Q96M95 AL133270.1-201ENST00000402635 279 ntBASIC4.32□□□□□ -1.72
CCDC42Q96M95 AL139128.1-201ENST00000413921 941 ntBASIC4.32□□□□□ -1.72
CCDC42Q96M95 AC009302.1-201ENST00000417147 390 ntBASIC4.32□□□□□ -1.72
CCDC42Q96M95 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC42Q96M95 FCF1P7-201ENST00000451185 558 ntBASIC4.32□□□□□ -1.72
CCDC42Q96M95 FABP3P2-201ENST00000453169 399 ntBASIC4.32□□□□□ -1.72
CCDC42Q96M95 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC42Q96M95 AL133244.1-201ENST00000456007 258 ntBASIC4.32□□□□□ -1.72
CCDC42Q96M95 RN7SL481P-201ENST00000477764 299 ntBASIC4.32□□□□□ -1.72
CCDC42Q96M95 AC016687.1-201ENST00000482574 353 ntBASIC4.32□□□□□ -1.72
CCDC42Q96M95 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.32□□□□□ -1.72
CCDC42Q96M95 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC42Q96M95 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC42Q96M95 snoU109.6-201ENST00000516831 118 ntBASIC4.32□□□□□ -1.72
CCDC42Q96M95 RNA5SP143-201ENST00000516936 115 ntBASIC4.32□□□□□ -1.72
CCDC42Q96M95 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC42Q96M95 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC42Q96M95 AC063949.1-201ENST00000552900 865 ntBASIC4.32□□□□□ -1.72
CCDC42Q96M95 AL121839.1-201ENST00000556233 1185 ntBASIC4.32□□□□□ -1.72
CCDC42Q96M95 AC105036.1-201ENST00000566222 271 ntBASIC4.32□□□□□ -1.72
CCDC42Q96M95 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC42Q96M95 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC42Q96M95 SNORD39.2-201ENST00000579995 76 ntBASIC4.32□□□□□ -1.72
CCDC42Q96M95 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC42Q96M95 RN7SL722P-201ENST00000617780 284 ntBASIC4.32□□□□□ -1.72
CCDC42Q96M95 RN7SL565P-201ENST00000618246 284 ntBASIC4.32□□□□□ -1.72
CCDC42Q96M95 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC42Q96M95 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC42Q96M95 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
CCDC42Q96M95 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC42Q96M95 NCAPGP1-201ENST00000505112 1814 ntBASIC4.31□□□□□ -1.72
CCDC42Q96M95 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
CCDC42Q96M95 MIR1183-201ENST00000408856 89 ntBASIC4.31□□□□□ -1.72
CCDC42Q96M95 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC42Q96M95 AC007394.1-201ENST00000421941 531 ntBASIC4.31□□□□□ -1.72
CCDC42Q96M95 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC42Q96M95 AL772161.1-201ENST00000439130 476 ntBASIC4.31□□□□□ -1.72
CCDC42Q96M95 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC42Q96M95 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.31□□□□□ -1.72
CCDC42Q96M95 FHP1-201ENST00000442741 703 ntBASIC4.31□□□□□ -1.72
CCDC42Q96M95 RPS4XP4-201ENST00000443195 763 ntBASIC4.31□□□□□ -1.72
CCDC42Q96M95 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC42Q96M95 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC42Q96M95 AL500522.2-201ENST00000448562 343 ntBASIC4.31□□□□□ -1.72
CCDC42Q96M95 EIF2S2P4-201ENST00000461070 984 ntBASIC4.31□□□□□ -1.72
CCDC42Q96M95 AC106872.2-201ENST00000494303 480 ntBASIC4.31□□□□□ -1.72
CCDC42Q96M95 IGBP1P5-201ENST00000507524 1000 ntBASIC4.31□□□□□ -1.72
CCDC42Q96M95 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC42Q96M95 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC42Q96M95 NARSP2-201ENST00000518524 679 ntBASIC4.31□□□□□ -1.72
CCDC42Q96M95 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC42Q96M95 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC42Q96M95 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.31□□□□□ -1.72
CCDC42Q96M95 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC42Q96M95 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC42Q96M95 AL021707.7-201ENST00000607991 416 ntBASIC4.31□□□□□ -1.72
CCDC42Q96M95 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC42Q96M95 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms