Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RNU6-775P-201ENST00000459318 96 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AC092324.1-201ENST00000468671 324 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 BX284632.1-201ENST00000478218 541 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 COX6B1P5-201ENST00000509843 249 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AC007016.1-201ENST00000512110 244 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AC090281.1-201ENST00000523019 276 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 OR7E128P-201ENST00000532736 1024 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 FKBP1BP1-201ENST00000553366 325 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AC209154.1-201ENST00000582156 337 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AC073137.1-201ENST00000605636 634 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 MIR4496-201ENST00000635896 61 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AL139254.3-201ENST00000641097 674 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AL136164.3-201ENST00000624429 3978 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 ZNF90P1-201ENST00000480493 1951 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.72
ZNF540Q8NDQ6 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.34□□□□□ -1.72
ZNF540Q8NDQ6 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
ZNF540Q8NDQ6 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 NSRP1P1-201ENST00000444067 1693 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 RN7SKP149-201ENST00000363008 344 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 ARL4AP5-201ENST00000404372 599 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 RNU2-6P-201ENST00000411404 190 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AC104837.2-201ENST00000427236 424 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 MTND4LP14-201ENST00000429447 288 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AL049745.1-201ENST00000433953 286 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 ARL5AP2-201ENST00000444698 533 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 YWHAQP9-201ENST00000445891 512 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 RPS3AP53-201ENST00000454716 778 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AP000873.1-201ENST00000463987 400 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 RPS26P28-201ENST00000470806 348 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 RPL7P16-201ENST00000479738 738 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AC140172.1-201ENST00000502928 141 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AC092593.2-201ENST00000513866 913 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AC100770.1-201ENST00000532310 322 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AC015912.2-201ENST00000571053 181 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 TVP23CP2-201ENST00000571473 623 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 MTND6P33-201ENST00000571794 183 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AL121834.1-201ENST00000572284 509 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AC005377.1-201ENST00000605126 456 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AC239803.2-201ENST00000610161 430 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 uc_338.32-201ENST00000615087 172 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 MIR7154-201ENST00000620673 73 ntBASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
ZNF540Q8NDQ6 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC009501.3-201ENST00000605001 1352 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 SNORD115-48-201ENST00000364764 76 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 AC083799.1-201ENST00000366451 910 ntBASIC4.32□□□□□ -1.72
ZNF540Q8NDQ6 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms