Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 TAS2R6P-201ENST00000605022 826 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 AL392112.1-201ENST00000605115 829 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 AL451074.6-201ENST00000608512 729 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 DLEU2_1.1-201ENST00000612089 120 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 AC010678.1-201ENST00000614118 713 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 AC013476.2-201ENST00000614456 459 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 DLEU2_1.2-201ENST00000614667 120 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 AC104985.2-201ENST00000620598 500 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.54□□□□□ -1.52
USP39Q53GS9 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC5.54□□□□□ -1.52
USP39Q53GS9 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC5.54□□□□□ -1.52
USP39Q53GS9 MT-RNR2-201ENST00000387347 1559 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 AC083843.2-201ENST00000568248 6253 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
USP39Q53GS9 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
USP39Q53GS9 AC027228.2-201ENST00000567141 2154 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
USP39Q53GS9 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
USP39Q53GS9 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
USP39Q53GS9 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
USP39Q53GS9 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.53□□□□□ -1.52
USP39Q53GS9 AL391994.1-201ENST00000254724 282 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
USP39Q53GS9 RNU1-146P-201ENST00000364015 165 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
USP39Q53GS9 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
USP39Q53GS9 snosnR66.1-201ENST00000391095 99 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 HMGB1P10-201ENST00000395823 563 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 ATP5F1P4-201ENST00000397288 746 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 MIR548F1-201ENST00000408667 84 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.53□□□□□ -1.52
USP39Q53GS9 RNU6-920P-201ENST00000410926 92 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 RNU4-74P-201ENST00000411280 161 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 RPA2P2-201ENST00000419698 796 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC5.53□□□□□ -1.52
USP39Q53GS9 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.53□□□□□ -1.52
USP39Q53GS9 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC5.53□□□□□ -1.52
USP39Q53GS9 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC5.53□□□□□ -1.52
USP39Q53GS9 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
USP39Q53GS9 AC122718.1-201ENST00000439448 744 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 MTCYBP34-201ENST00000439552 670 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 ELOCP10-201ENST00000440624 327 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.53□□□□□ -1.52
USP39Q53GS9 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.53□□□□□ -1.52
USP39Q53GS9 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.53□□□□□ -1.52
USP39Q53GS9 IGBP1P3-201ENST00000447449 1000 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
USP39Q53GS9 RPL7P32-201ENST00000457119 744 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.53□□□□□ -1.52
USP39Q53GS9 FAM133DP-201ENST00000464802 691 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC5.53□□□□□ -1.52
USP39Q53GS9 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC5.53□□□□□ -1.52
USP39Q53GS9 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC5.53□□□□□ -1.52
USP39Q53GS9 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.53□□□□□ -1.52
USP39Q53GS9 GLUD1P3-202ENST00000508551 200 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 GAPDHP62-201ENST00000515313 990 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 IGLV3-24-201ENST00000517477 197 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC5.53□□□□□ -1.52
USP39Q53GS9 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC5.53□□□□□ -1.52
USP39Q53GS9 HIGD1AP18-201ENST00000520730 278 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.53□□□□□ -1.52
USP39Q53GS9 AP001922.4-201ENST00000526967 290 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC5.53□□□□□ -1.52
USP39Q53GS9 RPS3AP4-201ENST00000555161 764 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.53□□□□□ -1.52
USP39Q53GS9 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.53□□□□□ -1.52
USP39Q53GS9 AC092325.1-201ENST00000566449 554 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 OR1F2P-201ENST00000570470 933 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC5.53□□□□□ -1.52
USP39Q53GS9 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.53□□□□□ -1.52
USP39Q53GS9 ELOCP34-201ENST00000604436 327 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.53□□□□□ -1.52
USP39Q53GS9 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC5.53□□□□□ -1.52
USP39Q53GS9 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.53□□□□□ -1.52
USP39Q53GS9 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
USP39Q53GS9 AC095031.1-201ENST00000623685 672 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 AC005618.4-201ENST00000625053 554 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
USP39Q53GS9 AC087359.1-201ENST00000508335 1740 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 CASC19-260ENST00000641828 2001 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.53□□□□□ -1.52
USP39Q53GS9 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
USP39Q53GS9 MTND4P23-201ENST00000447723 1363 ntBASIC5.53□□□□□ -1.52
USP39Q53GS9 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
USP39Q53GS9 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
USP39Q53GS9 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
USP39Q53GS9 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
USP39Q53GS9 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
USP39Q53GS9 AC093775.1-201ENST00000624154 1868 ntBASIC5.52□□□□□ -1.53
USP39Q53GS9 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.52□□□□□ -1.53
USP39Q53GS9 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.52□□□□□ -1.53
USP39Q53GS9 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
USP39Q53GS9 OR56B2P-201ENST00000317102 954 ntBASIC5.52□□□□□ -1.53
USP39Q53GS9 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
USP39Q53GS9 AL672167.1-206ENST00000356293 943 ntBASIC5.52□□□□□ -1.53
USP39Q53GS9 NACA3P-201ENST00000359690 648 ntBASIC5.52□□□□□ -1.53
USP39Q53GS9 MIR133B-201ENST00000362210 119 ntBASIC5.52□□□□□ -1.53
USP39Q53GS9 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
USP39Q53GS9 RNU1-106P-201ENST00000384382 164 ntBASIC5.52□□□□□ -1.53
USP39Q53GS9 RNU6-757P-201ENST00000410334 100 ntBASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms