Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 AC091516.1-201ENST00000549191 703 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 AL353600.1-201ENST00000608148 251 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 MIR7975-201ENST00000619350 68 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 AP001002.2-201ENST00000625137 386 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 OR6C71P-201ENST00000432580 913 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 OR9M1P-201ENST00000459641 921 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 AL049873.1-201ENST00000480540 376 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 RPL7P24-201ENST00000493052 752 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 CDH12P2-201ENST00000504393 298 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 AL352979.3-201ENST00000553515 247 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 AC007066.2-202ENST00000566531 914 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 MIR3124-201ENST00000582636 67 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 AL122016.1-201ENST00000403365 367 ntBASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 HMGB3P19-201ENST00000403971 560 ntBASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 AC004448.2-201ENST00000422360 586 ntBASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 PRDX3P3-201ENST00000447765 522 ntBASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 AC090589.1-201ENST00000473109 362 ntBASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 HMGN1P15-201ENST00000513870 295 ntBASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 AC026979.4-201ENST00000606555 645 ntBASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 MIR8058-201ENST00000615737 89 ntBASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC88AQ3V6T2 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 A2MP1-204ENST00000566278 4130 ntBASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 MIR490-201ENST00000384865 128 ntBASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 BNIP3P41-201ENST00000503774 571 ntBASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 AC021146.3-201ENST00000511911 260 ntBASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 HSPE1P5-201ENST00000561489 272 ntBASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 AC106782.4-201ENST00000568264 210 ntBASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 MIR5684-201ENST00000585074 65 ntBASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 AC015726.1-201ENST00000602353 681 ntBASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 ELOCP35-201ENST00000604289 336 ntBASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 MIR432-201ENST00000606207 94 ntBASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 AC023509.5-201ENST00000617434 807 ntBASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.96□□□□□ -1.61
CCDC88AQ3V6T2 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 AC023389.2-201ENST00000580031 955 ntBASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 LSM1P2-201ENST00000604911 322 ntBASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms