Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 BNIP3P23-201ENST00000599655 511 ntBASIC6.29□□□□□ -1.4
LIG3P49916 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC6.29□□□□□ -1.4
LIG3P49916 AC104458.1-201ENST00000608243 463 ntBASIC6.29□□□□□ -1.4
LIG3P49916 AC243773.3-201ENST00000613270 256 ntBASIC6.29□□□□□ -1.4
LIG3P49916 AC063943.3-201ENST00000615562 356 ntBASIC6.29□□□□□ -1.4
LIG3P49916 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
LIG3P49916 DLEU1_2.1-201ENST00000617920 342 ntBASIC6.29□□□□□ -1.4
LIG3P49916 OR4G11P-202ENST00000642116 1414 ntBASIC6.29□□□□□ -1.4
LIG3P49916 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
LIG3P49916 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
LIG3P49916 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
LIG3P49916 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
LIG3P49916 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC6.29□□□□□ -1.4
LIG3P49916 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
LIG3P49916 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
LIG3P49916 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6.29□□□□□ -1.4
LIG3P49916 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
LIG3P49916 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC6.29□□□□□ -1.4
LIG3P49916 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC6.29□□□□□ -1.4
LIG3P49916 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
LIG3P49916 AL133243.2-201ENST00000610331 1621 ntBASIC6.28□□□□□ -1.4
LIG3P49916 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
LIG3P49916 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.28□□□□□ -1.4
LIG3P49916 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC6.28□□□□□ -1.4
LIG3P49916 AC011416.1-201ENST00000514947 1732 ntBASIC6.28□□□□□ -1.4
LIG3P49916 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
LIG3P49916 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
LIG3P49916 AP001284.1-201ENST00000528393 2118 ntBASIC6.28□□□□□ -1.4
LIG3P49916 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
LIG3P49916 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC6.28□□□□□ -1.4
LIG3P49916 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
LIG3P49916 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
LIG3P49916 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
LIG3P49916 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
LIG3P49916 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC6.28□□□□□ -1.4
LIG3P49916 Y_RNA.450-201ENST00000384198 113 ntBASIC6.28□□□□□ -1.4
LIG3P49916 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
LIG3P49916 RNU2-22P-201ENST00000411266 212 ntBASIC6.28□□□□□ -1.4
LIG3P49916 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC6.28□□□□□ -1.4
LIG3P49916 AL121878.1-201ENST00000418638 859 ntBASIC6.28□□□□□ -1.4
LIG3P49916 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC6.28□□□□□ -1.4
LIG3P49916 SETP9-201ENST00000423837 832 ntBASIC6.28□□□□□ -1.4
LIG3P49916 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC6.28□□□□□ -1.4
LIG3P49916 HSPD1P12-201ENST00000429127 1069 ntBASIC6.28□□□□□ -1.4
LIG3P49916 FTO-202ENST00000431610 707 ntTSL 3 BASIC6.28□□□□□ -1.4
LIG3P49916 MTND3P23-201ENST00000431980 347 ntBASIC6.28□□□□□ -1.4
LIG3P49916 IGLV3-4-201ENST00000432300 244 ntBASIC6.28□□□□□ -1.4
LIG3P49916 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC6.28□□□□□ -1.4
LIG3P49916 AC092427.1-201ENST00000439177 601 ntBASIC6.28□□□□□ -1.4
LIG3P49916 MTND3P10-201ENST00000450967 341 ntBASIC6.28□□□□□ -1.4
LIG3P49916 RPL7AP52-201ENST00000458096 790 ntBASIC6.28□□□□□ -1.4
LIG3P49916 MEMO1P3-201ENST00000459811 302 ntBASIC6.28□□□□□ -1.4
LIG3P49916 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC6.28□□□□□ -1.4
LIG3P49916 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC6.28□□□□□ -1.4
LIG3P49916 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC6.28□□□□□ -1.4
LIG3P49916 AC010342.1-201ENST00000514047 877 ntBASIC6.28□□□□□ -1.4
LIG3P49916 RN7SKP70-201ENST00000516655 271 ntBASIC6.28□□□□□ -1.4
LIG3P49916 Y_RNA.702-201ENST00000516843 96 ntBASIC6.28□□□□□ -1.4
LIG3P49916 RNU6-430P-201ENST00000517078 107 ntBASIC6.28□□□□□ -1.4
LIG3P49916 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC6.28□□□□□ -1.4
LIG3P49916 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC6.28□□□□□ -1.4
LIG3P49916 MYL2-203ENST00000548438 664 ntTSL 3 BASIC6.28□□□□□ -1.4
LIG3P49916 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC6.28□□□□□ -1.4
LIG3P49916 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC6.28□□□□□ -1.4
LIG3P49916 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC6.28□□□□□ -1.4
LIG3P49916 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC6.28□□□□□ -1.4
LIG3P49916 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC6.28□□□□□ -1.4
LIG3P49916 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC6.28□□□□□ -1.4
LIG3P49916 AC104785.1-201ENST00000603220 588 ntBASIC6.28□□□□□ -1.4
LIG3P49916 AL161729.4-201ENST00000604650 476 ntBASIC6.28□□□□□ -1.4
LIG3P49916 AP001521.1-201ENST00000609150 300 ntBASIC6.28□□□□□ -1.4
LIG3P49916 AP000894.4-201ENST00000610185 483 ntBASIC6.28□□□□□ -1.4
LIG3P49916 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
LIG3P49916 AL592295.2-201ENST00000612578 206 ntBASIC6.28□□□□□ -1.4
LIG3P49916 AP003400.5-201ENST00000624827 617 ntBASIC6.28□□□□□ -1.4
LIG3P49916 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC6.28□□□□□ -1.4
LIG3P49916 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
LIG3P49916 LINC02019-201ENST00000608605 2060 ntBASIC6.28□□□□□ -1.4
LIG3P49916 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC6.28□□□□□ -1.4
LIG3P49916 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
LIG3P49916 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
LIG3P49916 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
LIG3P49916 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
LIG3P49916 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
LIG3P49916 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
LIG3P49916 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.28□□□□□ -1.4
LIG3P49916 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
LIG3P49916 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.27□□□□□ -1.4
LIG3P49916 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.4
LIG3P49916 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIG3P49916 GDI2P1-201ENST00000429312 1336 ntBASIC6.27□□□□□ -1.41
LIG3P49916 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
LIG3P49916 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIG3P49916 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC6.27□□□□□ -1.41
LIG3P49916 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIG3P49916 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
LIG3P49916 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC6.27□□□□□ -1.41
LIG3P49916 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIG3P49916 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIG3P49916 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms