Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
HMGB1P09429 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
HMGB1P09429 ZNF734P-201ENST00000419494 1534 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
HMGB1P09429 Y_RNA.493-201ENST00000384422 102 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 AL512422.1-201ENST00000407033 553 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 AL023807.1-201ENST00000407932 359 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC6.17□□□□□ -1.42
HMGB1P09429 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC6.17□□□□□ -1.42
HMGB1P09429 RPS6P14-201ENST00000425165 719 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 RPL7L1P9-201ENST00000431298 745 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 AC005345.1-201ENST00000431868 217 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC6.17□□□□□ -1.42
HMGB1P09429 HMGB1P16-201ENST00000447155 540 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 COX6CP18-201ENST00000448769 222 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 AC104982.1-201ENST00000478775 574 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC6.17□□□□□ -1.42
HMGB1P09429 NCOR1P1-202ENST00000486162 291 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 RPL5P23-201ENST00000496040 868 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 GTF2F2P1-201ENST00000511083 675 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 FTH1P9-201ENST00000513251 355 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC6.17□□□□□ -1.42
HMGB1P09429 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC6.17□□□□□ -1.42
HMGB1P09429 RNU6-276P-201ENST00000516114 96 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 SNORA19.3-201ENST00000516165 130 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC6.17□□□□□ -1.42
HMGB1P09429 IGKV2-18-201ENST00000522607 343 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC6.17□□□□□ -1.42
HMGB1P09429 AC118942.1-201ENST00000529674 1035 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC6.17□□□□□ -1.42
HMGB1P09429 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC6.17□□□□□ -1.42
HMGB1P09429 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
HMGB1P09429 AC107954.1-201ENST00000565906 727 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC6.17□□□□□ -1.42
HMGB1P09429 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC6.17□□□□□ -1.42
HMGB1P09429 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC6.17□□□□□ -1.42
HMGB1P09429 MIR4660-201ENST00000583549 74 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 AC011445.2-201ENST00000599274 173 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 AC113368.1-201ENST00000603736 382 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 AL139286.1-201ENST00000604465 483 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 AL592148.2-201ENST00000612210 372 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 AC004825.2-201ENST00000616634 455 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC6.17□□□□□ -1.42
HMGB1P09429 AC136428.4-201ENST00000634254 1155 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 CYP4F35P-202ENST00000636121 390 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC6.17□□□□□ -1.42
HMGB1P09429 SAGE4P-201ENST00000442271 3381 ntBASIC6.17□□□□□ -1.42
HMGB1P09429 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
HMGB1P09429 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
HMGB1P09429 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
HMGB1P09429 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
HMGB1P09429 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC6.17□□□□□ -1.42
HMGB1P09429 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC6.17□□□□□ -1.42
HMGB1P09429 AL592148.3-201ENST00000608771 2646 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
HMGB1P09429 AL133412.1-201ENST00000380194 2992 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
HMGB1P09429 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
HMGB1P09429 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
HMGB1P09429 AC026951.1-201ENST00000559530 2459 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 SAMMSON-226ENST00000642089 1582 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
HMGB1P09429 OR4A15-201ENST00000314706 1035 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 RNU6-263P-201ENST00000363811 107 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 RNA5SP435-201ENST00000364044 108 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
HMGB1P09429 U3.25-201ENST00000391209 220 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 RPL23AP48-201ENST00000406913 488 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 AMMECR1LP1-201ENST00000415152 841 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC6.16□□□□□ -1.42
HMGB1P09429 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC6.16□□□□□ -1.42
HMGB1P09429 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC6.16□□□□□ -1.42
HMGB1P09429 CHEK2P5-201ENST00000423877 246 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC6.16□□□□□ -1.42
HMGB1P09429 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC6.16□□□□□ -1.42
HMGB1P09429 AC133473.1-201ENST00000455173 299 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC6.16□□□□□ -1.42
HMGB1P09429 CREM-220ENST00000463314 964 ntTSL 2 BASIC6.16□□□□□ -1.42
HMGB1P09429 AL136126.1-201ENST00000473603 402 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC6.16□□□□□ -1.42
HMGB1P09429 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
HMGB1P09429 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC6.16□□□□□ -1.42
HMGB1P09429 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC6.16□□□□□ -1.42
HMGB1P09429 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC6.16□□□□□ -1.42
HMGB1P09429 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC6.16□□□□□ -1.42
HMGB1P09429 AP000790.1-201ENST00000528891 737 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC6.16□□□□□ -1.42
HMGB1P09429 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC6.16□□□□□ -1.42
HMGB1P09429 ASB8-215ENST00000540782 659 ntTSL 3 BASIC6.16□□□□□ -1.42
HMGB1P09429 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC6.16□□□□□ -1.42
HMGB1P09429 AC006349.1-201ENST00000555526 235 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 AC012146.2-201ENST00000576545 416 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC6.16□□□□□ -1.42
HMGB1P09429 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC6.16□□□□□ -1.42
HMGB1P09429 FKBP1AP1-201ENST00000594588 318 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC6.16□□□□□ -1.42
HMGB1P09429 Xist_exon1.1-201ENST00000618930 85 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 AL713922.2-201ENST00000619384 716 ntBASIC6.16□□□□□ -1.42
HMGB1P09429 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC6.16□□□□□ -1.42
HMGB1P09429 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 132.2 ms