Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC124312.6-202ENST00000623624 418 ntBASIC2.41□□□□□ -2.02
APOBP04114 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
APOBP04114 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
APOBP04114 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
APOBP04114 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
APOBP04114 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC2.4□□□□□ -2.02
APOBP04114 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC2.4□□□□□ -2.02
APOBP04114 Z97055.1-201ENST00000419730 712 ntBASIC2.4□□□□□ -2.02
APOBP04114 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.4□□□□□ -2.02
APOBP04114 RPS27AP15-201ENST00000447672 466 ntBASIC2.4□□□□□ -2.02
APOBP04114 VN1R32P-201ENST00000452234 905 ntBASIC2.4□□□□□ -2.02
APOBP04114 RBMY2UP-201ENST00000453474 324 ntBASIC2.4□□□□□ -2.02
APOBP04114 RPL7P24-201ENST00000493052 752 ntBASIC2.4□□□□□ -2.02
APOBP04114 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.4□□□□□ -2.02
APOBP04114 RAC1P2-201ENST00000511164 579 ntBASIC2.4□□□□□ -2.02
APOBP04114 MIR4433B-201ENST00000581329 102 ntBASIC2.4□□□□□ -2.02
APOBP04114 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC2.4□□□□□ -2.02
APOBP04114 AC006504.3-201ENST00000586818 523 ntBASIC2.4□□□□□ -2.02
APOBP04114 AC095038.2-201ENST00000621464 1070 ntBASIC2.4□□□□□ -2.02
APOBP04114 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC2.4□□□□□ -2.02
APOBP04114 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC2.4□□□□□ -2.02
APOBP04114 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
APOBP04114 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
APOBP04114 NIPBL-202ENST00000448238 8729 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
APOBP04114 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
APOBP04114 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
APOBP04114 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC2.4□□□□□ -2.03
APOBP04114 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
APOBP04114 ANKRD20A10P-201ENST00000457591 1515 ntBASIC2.4□□□□□ -2.03
APOBP04114 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC2.4□□□□□ -2.03
APOBP04114 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC2.4□□□□□ -2.03
APOBP04114 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC2.4□□□□□ -2.03
APOBP04114 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
APOBP04114 SNORA3C-201ENST00000408792 125 ntBASIC2.4□□□□□ -2.03
APOBP04114 RPL26P28-201ENST00000451325 435 ntBASIC2.4□□□□□ -2.03
APOBP04114 RPL31P61-201ENST00000496160 376 ntBASIC2.4□□□□□ -2.03
APOBP04114 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC2.4□□□□□ -2.03
APOBP04114 AL359219.2-201ENST00000555184 348 ntBASIC2.4□□□□□ -2.03
APOBP04114 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC2.4□□□□□ -2.03
APOBP04114 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC2.4□□□□□ -2.03
APOBP04114 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
APOBP04114 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC2.4□□□□□ -2.03
APOBP04114 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC2.4□□□□□ -2.03
APOBP04114 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
APOBP04114 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC2.4□□□□□ -2.03
APOBP04114 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC2.4□□□□□ -2.03
APOBP04114 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
APOBP04114 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
APOBP04114 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC2.4□□□□□ -2.03
APOBP04114 SNORA38.1-201ENST00000364172 131 ntBASIC2.4□□□□□ -2.03
APOBP04114 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC2.4□□□□□ -2.03
APOBP04114 Vault.1-201ENST00000516474 102 ntBASIC2.4□□□□□ -2.03
APOBP04114 DEFB109D-201ENST00000529497 240 ntBASIC2.4□□□□□ -2.03
APOBP04114 AC005344.1-201ENST00000613391 459 ntBASIC2.4□□□□□ -2.03
APOBP04114 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC2.4□□□□□ -2.03
APOBP04114 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC2.4□□□□□ -2.03
APOBP04114 AC000374.1-201ENST00000434698 1745 ntBASIC2.4□□□□□ -2.03
APOBP04114 AC004944.1-201ENST00000517807 3059 ntBASIC2.4□□□□□ -2.03
APOBP04114 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
APOBP04114 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC2.39□□□□□ -2.03
APOBP04114 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC2.39□□□□□ -2.03
APOBP04114 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC2.39□□□□□ -2.03
APOBP04114 RPL21P110-201ENST00000433345 446 ntBASIC2.39□□□□□ -2.03
APOBP04114 VN1R25P-201ENST00000443385 738 ntBASIC2.39□□□□□ -2.03
APOBP04114 AC096576.1-201ENST00000489014 359 ntBASIC2.39□□□□□ -2.03
APOBP04114 SNORA70.18-201ENST00000516696 98 ntBASIC2.39□□□□□ -2.03
APOBP04114 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC2.39□□□□□ -2.03
APOBP04114 SNX6P1-201ENST00000601728 1224 ntBASIC2.39□□□□□ -2.03
APOBP04114 KC877982.1-201ENST00000602313 470 ntBASIC2.39□□□□□ -2.03
APOBP04114 RPL12P50-201ENST00000603116 116 ntBASIC2.39□□□□□ -2.03
APOBP04114 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
APOBP04114 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
APOBP04114 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
APOBP04114 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
APOBP04114 AP004289.2-201ENST00000444413 1457 ntBASIC2.39□□□□□ -2.03
APOBP04114 MTCO1P46-201ENST00000451639 1491 ntBASIC2.39□□□□□ -2.03
APOBP04114 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
APOBP04114 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
APOBP04114 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
APOBP04114 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
APOBP04114 RPL23AP57-201ENST00000332361 466 ntBASIC2.39□□□□□ -2.03
APOBP04114 RNA5SP126-201ENST00000365092 109 ntBASIC2.39□□□□□ -2.03
APOBP04114 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC2.39□□□□□ -2.03
APOBP04114 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC2.39□□□□□ -2.03
APOBP04114 AC080014.1-201ENST00000496877 1201 ntBASIC2.39□□□□□ -2.03
APOBP04114 MORF4L2P1-201ENST00000503761 858 ntBASIC2.39□□□□□ -2.03
APOBP04114 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
APOBP04114 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
APOBP04114 CROT-204ENST00000442291 1993 ntTSL 5 BASIC2.39□□□□□ -2.03
APOBP04114 BDP1P-201ENST00000582658 1990 ntBASIC2.39□□□□□ -2.03
APOBP04114 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
APOBP04114 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
APOBP04114 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC2.39□□□□□ -2.03
APOBP04114 AC139426.3-201ENST00000605648 2059 ntBASIC2.39□□□□□ -2.03
APOBP04114 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC2.39□□□□□ -2.03
APOBP04114 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC2.39□□□□□ -2.03
APOBP04114 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
APOBP04114 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
APOBP04114 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
APOBP04114 GSTA8P-201ENST00000404253 637 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms