Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL3A1P02461 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL3A1P02461 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC5.69□□□□□ -1.5
COL3A1P02461 AC078883.4-201ENST00000623218 367 ntBASIC5.69□□□□□ -1.5
COL3A1P02461 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL3A1P02461 AL133243.3-201ENST00000617415 3004 ntBASIC5.69□□□□□ -1.5
COL3A1P02461 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
COL3A1P02461 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.69□□□□□ -1.5
COL3A1P02461 MTND4P10-201ENST00000446199 1363 ntBASIC5.68□□□□□ -1.5
COL3A1P02461 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
COL3A1P02461 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.68□□□□□ -1.5
COL3A1P02461 RNU6-1257P-201ENST00000384625 110 ntBASIC5.68□□□□□ -1.5
COL3A1P02461 MIR195-201ENST00000385194 87 ntBASIC5.68□□□□□ -1.5
COL3A1P02461 SNORD66.1-201ENST00000391230 76 ntBASIC5.68□□□□□ -1.5
COL3A1P02461 MIR1193-201ENST00000408109 78 ntBASIC5.68□□□□□ -1.5
COL3A1P02461 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.68□□□□□ -1.5
COL3A1P02461 DNAJA1P1-201ENST00000425106 1187 ntBASIC5.68□□□□□ -1.5
COL3A1P02461 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC5.68□□□□□ -1.5
COL3A1P02461 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC5.68□□□□□ -1.5
COL3A1P02461 OR6K5P-201ENST00000447050 945 ntBASIC5.68□□□□□ -1.5
COL3A1P02461 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
COL3A1P02461 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC5.68□□□□□ -1.5
COL3A1P02461 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.68□□□□□ -1.5
COL3A1P02461 NPM1P35-201ENST00000533043 868 ntBASIC5.68□□□□□ -1.5
COL3A1P02461 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC5.68□□□□□ -1.5
COL3A1P02461 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC5.68□□□□□ -1.5
COL3A1P02461 SLC25A36P1-201ENST00000590111 465 ntBASIC5.68□□□□□ -1.5
COL3A1P02461 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC5.68□□□□□ -1.5
COL3A1P02461 AC011939.3-201ENST00000613686 466 ntBASIC5.68□□□□□ -1.5
COL3A1P02461 SNX18P1Y-201ENST00000616231 511 ntBASIC5.68□□□□□ -1.5
COL3A1P02461 MIR8059-201ENST00000620427 81 ntBASIC5.68□□□□□ -1.5
COL3A1P02461 AP003476.1-201ENST00000623984 516 ntBASIC5.68□□□□□ -1.5
COL3A1P02461 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL3A1P02461 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.68□□□□□ -1.5
COL3A1P02461 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL3A1P02461 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.68□□□□□ -1.5
COL3A1P02461 AC017104.4-201ENST00000636283 1592 ntBASIC5.68□□□□□ -1.5
COL3A1P02461 AC005261.4-201ENST00000600047 1385 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL3A1P02461 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.67□□□□□ -1.5
COL3A1P02461 AC010266.2-201ENST00000564741 3255 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC5.67□□□□□ -1.5
COL3A1P02461 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
COL3A1P02461 PCF11-AS1-201ENST00000602322 1516 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.67□□□□□ -1.5
COL3A1P02461 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL3A1P02461 AL121657.1-201ENST00000327215 531 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
COL3A1P02461 RNA5SP175-201ENST00000364275 119 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 Y_RNA.318-201ENST00000365131 97 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 RN7SKP186-201ENST00000365371 303 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC5.67□□□□□ -1.5
COL3A1P02461 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC5.67□□□□□ -1.5
COL3A1P02461 COX6B1P7-201ENST00000430845 235 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 MUPP-201ENST00000438111 566 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC5.67□□□□□ -1.5
COL3A1P02461 NUTF2P3-201ENST00000448540 384 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 MTND5P8-201ENST00000449817 1083 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 AC010468.1-201ENST00000461022 817 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
COL3A1P02461 RPL23AP65-201ENST00000475608 468 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC5.67□□□□□ -1.5
COL3A1P02461 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC5.67□□□□□ -1.5
COL3A1P02461 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.67□□□□□ -1.5
COL3A1P02461 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.67□□□□□ -1.5
COL3A1P02461 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC5.67□□□□□ -1.5
COL3A1P02461 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC5.67□□□□□ -1.5
COL3A1P02461 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC5.67□□□□□ -1.5
COL3A1P02461 CCNHP1-201ENST00000513311 678 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL3A1P02461 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
COL3A1P02461 IGLVIV-66-1-201ENST00000521832 460 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC5.67□□□□□ -1.5
COL3A1P02461 EMP1-206ENST00000537612 505 ntTSL 3 BASIC5.67□□□□□ -1.5
COL3A1P02461 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL3A1P02461 RPL21P7-201ENST00000557463 483 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC5.67□□□□□ -1.5
COL3A1P02461 AC145350.1-201ENST00000567426 208 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.67□□□□□ -1.5
COL3A1P02461 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC5.67□□□□□ -1.5
COL3A1P02461 BNIP3P22-201ENST00000593399 556 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 AC068620.3-201ENST00000602749 560 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC5.67□□□□□ -1.5
COL3A1P02461 AC009032.1-201ENST00000617574 431 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 AP003485.2-201ENST00000623636 610 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL3A1P02461 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL3A1P02461 IQCB2P-201ENST00000401788 1633 ntBASIC5.67□□□□□ -1.5
COL3A1P02461 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.67□□□□□ -1.5
COL3A1P02461 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC5.67□□□□□ -1.5
COL3A1P02461 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL3A1P02461 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
COL3A1P02461 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
COL3A1P02461 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.67□□□□□ -1.5
COL3A1P02461 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL3A1P02461 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL3A1P02461 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.67□□□□□ -1.5
COL3A1P02461 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
COL3A1P02461 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL3A1P02461 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms