Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.16□□□□□ -1.74
CLDN9O95484 AC009229.4-201ENST00000623854 1947 ntBASIC4.16□□□□□ -1.74
CLDN9O95484 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
CLDN9O95484 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CLDN9O95484 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
CLDN9O95484 AC011266.1-201ENST00000624119 3569 ntBASIC4.15□□□□□ -1.74
CLDN9O95484 Z98755.1-201ENST00000407015 1384 ntBASIC4.15□□□□□ -1.74
CLDN9O95484 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
CLDN9O95484 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
CLDN9O95484 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.74
CLDN9O95484 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
CLDN9O95484 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
CLDN9O95484 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.15□□□□□ -1.74
CLDN9O95484 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.15□□□□□ -1.74
CLDN9O95484 PHKBP1-201ENST00000450951 1951 ntBASIC4.15□□□□□ -1.74
CLDN9O95484 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
CLDN9O95484 AC025031.4-201ENST00000621248 3271 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 AC019155.1-201ENST00000382242 574 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 RNU6-146P-201ENST00000384602 108 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 RPL23AP59-201ENST00000399415 461 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 AL121834.1-202ENST00000404494 277 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 AL356967.1-201ENST00000406305 431 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.15□□□□□ -1.75
CLDN9O95484 RNA5SP498-201ENST00000411342 120 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.15□□□□□ -1.75
CLDN9O95484 AC119751.6-201ENST00000416712 186 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.15□□□□□ -1.75
CLDN9O95484 RPL12P34-201ENST00000424532 479 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 RPL12P28-201ENST00000430852 489 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.15□□□□□ -1.75
CLDN9O95484 AL512326.1-201ENST00000443050 721 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.15□□□□□ -1.75
CLDN9O95484 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC4.15□□□□□ -1.75
CLDN9O95484 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.75
CLDN9O95484 RPL7AP28-201ENST00000464513 571 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 RPS27AP16-201ENST00000492222 470 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 AC104164.2-201ENST00000496953 495 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.15□□□□□ -1.75
CLDN9O95484 AC111000.3-201ENST00000508057 576 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.15□□□□□ -1.75
CLDN9O95484 HMGB3P13-201ENST00000511263 607 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 IGLVIV-65-201ENST00000517313 360 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.15□□□□□ -1.75
CLDN9O95484 NPM1P6-201ENST00000521088 871 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.15□□□□□ -1.75
CLDN9O95484 IFITM8P-201ENST00000522529 394 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 AC068446.3-201ENST00000555285 382 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.15□□□□□ -1.75
CLDN9O95484 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.15□□□□□ -1.75
CLDN9O95484 AC023158.1-201ENST00000561632 1025 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 AC124068.1-201ENST00000563131 678 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC4.15□□□□□ -1.75
CLDN9O95484 AL354984.3-201ENST00000604803 325 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 MIR432-201ENST00000606207 94 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.15□□□□□ -1.75
CLDN9O95484 AP000346.3-201ENST00000622821 210 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC4.15□□□□□ -1.75
CLDN9O95484 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.15□□□□□ -1.75
CLDN9O95484 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CLDN9O95484 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.15□□□□□ -1.75
CLDN9O95484 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.15□□□□□ -1.75
CLDN9O95484 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.15□□□□□ -1.75
CLDN9O95484 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CLDN9O95484 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CLDN9O95484 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.15□□□□□ -1.75
CLDN9O95484 AC114546.3-201ENST00000623582 1734 ntBASIC4.15□□□□□ -1.75
CLDN9O95484 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
CLDN9O95484 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.75
CLDN9O95484 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CLDN9O95484 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
CLDN9O95484 AL133243.3-201ENST00000617415 3004 ntBASIC4.14□□□□□ -1.75
CLDN9O95484 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
CLDN9O95484 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
CLDN9O95484 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
CLDN9O95484 NOL8P1-201ENST00000508336 3529 ntBASIC4.14□□□□□ -1.75
CLDN9O95484 AL132640.2-201ENST00000559968 1698 ntBASIC4.14□□□□□ -1.75
CLDN9O95484 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CLDN9O95484 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
CLDN9O95484 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
CLDN9O95484 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CLDN9O95484 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CLDN9O95484 RNA5SP52-201ENST00000362448 134 ntBASIC4.14□□□□□ -1.75
CLDN9O95484 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.14□□□□□ -1.75
CLDN9O95484 AC016397.1-201ENST00000412463 242 ntBASIC4.14□□□□□ -1.75
CLDN9O95484 GTF2IP2-201ENST00000424290 697 ntBASIC4.14□□□□□ -1.75
CLDN9O95484 AL445528.1-201ENST00000426330 420 ntBASIC4.14□□□□□ -1.75
CLDN9O95484 MRPS33P4-201ENST00000434892 317 ntBASIC4.14□□□□□ -1.75
CLDN9O95484 PHBP16-201ENST00000446318 950 ntBASIC4.14□□□□□ -1.75
CLDN9O95484 RPL23AP81-201ENST00000455252 467 ntBASIC4.14□□□□□ -1.75
CLDN9O95484 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.14□□□□□ -1.75
CLDN9O95484 MTND2P28-201ENST00000457540 1044 ntBASIC4.14□□□□□ -1.75
CLDN9O95484 AL672167.3-201ENST00000465951 960 ntBASIC4.14□□□□□ -1.75
CLDN9O95484 RPS29P22-201ENST00000472363 168 ntBASIC4.14□□□□□ -1.75
CLDN9O95484 AK3P4-201ENST00000504283 583 ntBASIC4.14□□□□□ -1.75
CLDN9O95484 PARP4P3-201ENST00000510265 317 ntBASIC4.14□□□□□ -1.75
CLDN9O95484 AC093770.1-201ENST00000511559 571 ntBASIC4.14□□□□□ -1.75
CLDN9O95484 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.14□□□□□ -1.75
CLDN9O95484 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.14□□□□□ -1.75
CLDN9O95484 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms