Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC011037.1-201ENST00000483964 558 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 AC010374.1-201ENST00000503762 1237 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 HPRT1P2-201ENST00000505250 544 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 AC133555.2-201ENST00000550213 292 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 MIR4789-201ENST00000577469 82 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 MIR4270-201ENST00000581799 70 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 AC006116.7-201ENST00000590141 756 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 AC011453.2-201ENST00000603737 729 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 AL391358.1-201ENST00000605342 190 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 AL121932.1-201ENST00000605542 214 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 AC131238.1-201ENST00000617135 328 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 AC243756.2-201ENST00000618406 463 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 AC018926.3-201ENST00000618841 406 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 AL138955.1-201ENST00000622881 1040 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 LINC01808-202ENST00000641680 1116 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
VPS28Q9UK41 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS28Q9UK41 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS28Q9UK41 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS28Q9UK41 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS28Q9UK41 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 AC126323.6-202ENST00000568092 3511 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 TMEM161BP1-201ENST00000457388 1457 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS28Q9UK41 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS28Q9UK41 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS28Q9UK41 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS28Q9UK41 ASNSP1-204ENST00000641977 1664 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS28Q9UK41 SNORA51.12-201ENST00000384448 134 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 SNORD65C-201ENST00000390962 71 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 RNU6-932P-201ENST00000391108 106 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 U3.30-201ENST00000391308 210 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 RN7SKP100-201ENST00000411258 284 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 AP001324.1-201ENST00000428553 399 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 NRBF2P3-201ENST00000432731 865 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 CCNB1IP1P3-201ENST00000454702 829 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 RPL21P18-201ENST00000469899 480 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 ARL4AP1-201ENST00000503220 705 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS28Q9UK41 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 RN7SKP276-201ENST00000516242 268 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 AC022726.1-201ENST00000587475 207 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 AC012414.7-202ENST00000622705 1090 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 AP001273.1-201ENST00000624493 3152 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS28Q9UK41 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS28Q9UK41 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS28Q9UK41 AL592437.2-201ENST00000421655 2434 ntBASIC4.94□□□□□ -1.62
VPS28Q9UK41 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS28Q9UK41 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS28Q9UK41 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.94□□□□□ -1.62
VPS28Q9UK41 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS28Q9UK41 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS28Q9UK41 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
VPS28Q9UK41 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.93□□□□□ -1.62
VPS28Q9UK41 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 AL024507.1-201ENST00000412741 274 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 RPL30P3-201ENST00000424262 333 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
VPS28Q9UK41 AC012497.1-201ENST00000429392 575 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 FABP7P2-201ENST00000429946 379 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 RPS17P8-201ENST00000434525 335 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 RPS26P40-201ENST00000435209 294 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 NPM1P33-201ENST00000438918 872 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 UBE2V1P5-201ENST00000440070 405 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 144.2 ms