Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC010374.1-201ENST00000503762 1237 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 SETP12-201ENST00000514068 805 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AC004923.2-201ENST00000529649 369 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AC023575.1-201ENST00000580510 358 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 CBX3P2-202ENST00000583365 535 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 SLC25A36P1-201ENST00000590111 465 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AC110792.4-201ENST00000609843 298 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AC005962.2-201ENST00000611427 652 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AP004607.9-201ENST00000618202 316 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
LHX3Q9UBR4 AP000756.2-201ENST00000624168 2567 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 HSPD1P11-201ENST00000508643 1702 ntBASIC4.38□□□□□ -1.71
LHX3Q9UBR4 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 AC005332.5-201ENST00000591222 2919 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 SNORA62-201ENST00000365493 153 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 RNU6-185P-201ENST00000384421 107 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 RNU6-178P-201ENST00000384631 104 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 RNU4-74P-201ENST00000411280 161 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 CEACAMP8-201ENST00000413902 580 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 UBTFL3-201ENST00000418934 1024 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 AC012519.1-201ENST00000424588 610 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 AC006326.1-201ENST00000445465 787 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 UBTFL6-201ENST00000477929 1024 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 SYT14P1-201ENST00000481459 721 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 AC010627.1-201ENST00000503819 1294 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 COL6A4P2-205ENST00000509855 506 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 RNA5SP464-201ENST00000516251 108 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 RNA5SP49-201ENST00000516450 115 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 AC233266.2-201ENST00000567067 528 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 AC123786.2-201ENST00000603459 275 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 AC135178.6-201ENST00000605314 398 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 METTL8-218ENST00000638989 876 ntTSL 5 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 AC015813.6-201ENST00000624409 5808 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 MAPK10-320ENST00000641462 6696 ntBASIC4.37□□□□□ -1.71
LHX3Q9UBR4 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
LHX3Q9UBR4 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC105074.1-201ENST00000623380 3095 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 RNA5SP366-201ENST00000365454 123 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 SNORD66.1-201ENST00000391230 76 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 OR6C69P-201ENST00000394268 893 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AL353692.2-201ENST00000407054 335 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 RPL23AP26-201ENST00000412728 464 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 TRGV6-201ENST00000417928 299 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC234779.1-201ENST00000425910 285 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 MTCO1P52-201ENST00000433928 531 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 TRAPPC13P1-201ENST00000435991 1062 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AL513321.1-201ENST00000441175 761 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AL512326.1-201ENST00000443050 721 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 RPS23P7-201ENST00000466210 444 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC012158.1-204ENST00000483430 465 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC025459.1-201ENST00000504072 156 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC106806.2-201ENST00000509365 500 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC008958.1-201ENST00000511047 682 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 MTND2P31-201ENST00000512602 616 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC092593.2-201ENST00000513866 913 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms