Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RNA5SP307-201ENST00000362863 116 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 RNU1-130P-201ENST00000363930 160 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 SNORA56-201ENST00000383966 129 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 RNU6-40P-201ENST00000384254 107 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 MIR92A2-201ENST00000385299 75 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 MIR3065-201ENST00000390137 79 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 RPL23AP59-201ENST00000399415 461 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 TMSB10P2-201ENST00000416049 131 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS35Q96QK1 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS35Q96QK1 MTND2P21-201ENST00000436242 1042 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 AC114495.1-201ENST00000441274 436 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 RPL7P33-201ENST00000444159 742 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 TPT1P13-201ENST00000449760 499 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 EIF4A1P11-201ENST00000451239 222 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 Z95152.1-201ENST00000453556 656 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS35Q96QK1 ATP5G1P3-201ENST00000463301 410 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 AC006463.2-201ENST00000473326 348 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS35Q96QK1 SUMO1P1-201ENST00000497904 306 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 RNU6-1004P-201ENST00000516584 111 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS35Q96QK1 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
VPS35Q96QK1 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.41□□□□□ -1.7
VPS35Q96QK1 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC4.41□□□□□ -1.7
VPS35Q96QK1 RPL21P7-201ENST00000557463 483 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS35Q96QK1 AC010201.1-201ENST00000605051 540 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 AL356218.2-201ENST00000605264 187 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 AC242628.1-201ENST00000606810 391 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 AC090948.1-201ENST00000607464 549 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 AC116447.1-201ENST00000613153 453 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 AC011472.4-201ENST00000615848 491 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 AC016957.2-201ENST00000616998 848 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 AC005086.4-201ENST00000623065 213 ntBASIC4.41□□□□□ -1.7
VPS35Q96QK1 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS35Q96QK1 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS35Q96QK1 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS35Q96QK1 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
VPS35Q96QK1 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
VPS35Q96QK1 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS35Q96QK1 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.4□□□□□ -1.7
VPS35Q96QK1 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.7
VPS35Q96QK1 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
VPS35Q96QK1 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.7
VPS35Q96QK1 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.4□□□□□ -1.7
VPS35Q96QK1 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
VPS35Q96QK1 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS35Q96QK1 AC011155.1-201ENST00000316512 456 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 RNA5SP447-201ENST00000363749 119 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 MIR195-201ENST00000385194 87 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 Z86062.1-201ENST00000406773 777 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 FAR2P2-201ENST00000413041 594 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.4□□□□□ -1.71
VPS35Q96QK1 FAR2P4-202ENST00000425399 584 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC4.4□□□□□ -1.71
VPS35Q96QK1 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.4□□□□□ -1.71
VPS35Q96QK1 CDY14P-201ENST00000431260 1014 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.4□□□□□ -1.71
VPS35Q96QK1 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.4□□□□□ -1.71
VPS35Q96QK1 CDY12P-201ENST00000440679 1015 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.4□□□□□ -1.71
VPS35Q96QK1 H2AFZP6-201ENST00000444403 394 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 CDY13P-201ENST00000445813 1015 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 CDY23P-201ENST00000451661 1014 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 DDX39BP2-208ENST00000453923 258 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 DHFRP3-201ENST00000455595 559 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 AC092905.1-201ENST00000467527 949 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.4□□□□□ -1.71
VPS35Q96QK1 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.4□□□□□ -1.71
VPS35Q96QK1 MTCO1P31-201ENST00000506355 492 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC4.4□□□□□ -1.71
VPS35Q96QK1 AC090151.1-201ENST00000520784 730 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 AC068831.4-201ENST00000556118 109 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
VPS35Q96QK1 HMGB3P26-201ENST00000560051 582 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 ATP5J2P6-201ENST00000565203 266 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.4□□□□□ -1.71
VPS35Q96QK1 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS35Q96QK1 AC079587.1-201ENST00000603846 277 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 CR589904.2-201ENST00000612533 440 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 AL162233.1-201ENST00000620014 944 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
VPS35Q96QK1 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS35Q96QK1 CCT8P1-201ENST00000413611 1657 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
VPS35Q96QK1 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.4□□□□□ -1.71
VPS35Q96QK1 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
VPS35Q96QK1 USP9YP4-201ENST00000424401 1745 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS35Q96QK1 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS35Q96QK1 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS35Q96QK1 AC017104.4-201ENST00000636283 1592 ntBASIC4.4□□□□□ -1.71
VPS35Q96QK1 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS35Q96QK1 AL356489.2-201ENST00000566968 3528 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC074029.4-201ENST00000624796 1859 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS35Q96QK1 OR5P1P-201ENST00000299512 925 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms