Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC099670.2-201ENST00000435130 321 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 AC098614.3-201ENST00000438957 440 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC5.55□□□□□ -1.52
USP39Q53GS9 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC5.55□□□□□ -1.52
USP39Q53GS9 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP39Q53GS9 VN1R34P-201ENST00000447387 883 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 BUD31P2-201ENST00000449374 300 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 XKRYP5-201ENST00000449659 483 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 BX276092.8-201ENST00000455722 250 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP39Q53GS9 AC126182.1-201ENST00000478134 357 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.55□□□□□ -1.52
USP39Q53GS9 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC5.55□□□□□ -1.52
USP39Q53GS9 AC010285.3-201ENST00000511668 676 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC5.55□□□□□ -1.52
USP39Q53GS9 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 NAP1L1P1-201ENST00000524793 1063 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC5.55□□□□□ -1.52
USP39Q53GS9 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC5.55□□□□□ -1.52
USP39Q53GS9 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.55□□□□□ -1.52
USP39Q53GS9 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC5.55□□□□□ -1.52
USP39Q53GS9 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.55□□□□□ -1.52
USP39Q53GS9 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC5.55□□□□□ -1.52
USP39Q53GS9 MIR4436B2-201ENST00000581415 91 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 MIR4436B1-201ENST00000583272 91 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC5.55□□□□□ -1.52
USP39Q53GS9 WISP1-OT1-201ENST00000602893 642 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 NANOGP3-201ENST00000605855 286 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 AC006270.3-201ENST00000605967 1036 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 AC010857.1-201ENST00000606398 594 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC5.55□□□□□ -1.52
USP39Q53GS9 AC007684.1-201ENST00000609671 477 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 AC008498.1-201ENST00000613012 531 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.55□□□□□ -1.52
USP39Q53GS9 AC100827.5-201ENST00000615883 426 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.55□□□□□ -1.52
USP39Q53GS9 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.55□□□□□ -1.52
USP39Q53GS9 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
USP39Q53GS9 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP39Q53GS9 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP39Q53GS9 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP39Q53GS9 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP39Q53GS9 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP39Q53GS9 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC5.55□□□□□ -1.52
USP39Q53GS9 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP39Q53GS9 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.54□□□□□ -1.52
USP39Q53GS9 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
USP39Q53GS9 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
USP39Q53GS9 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.54□□□□□ -1.52
USP39Q53GS9 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP39Q53GS9 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
USP39Q53GS9 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
USP39Q53GS9 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
USP39Q53GS9 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
USP39Q53GS9 U3.4-201ENST00000363352 213 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC5.54□□□□□ -1.52
USP39Q53GS9 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP39Q53GS9 Y_RNA.390-201ENST00000383932 102 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 RN7SKP142-201ENST00000411236 328 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 MTCO1P17-201ENST00000411522 491 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC5.54□□□□□ -1.52
USP39Q53GS9 OR4K6P-201ENST00000416478 897 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 MTCYBP38-201ENST00000417160 1123 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.54□□□□□ -1.52
USP39Q53GS9 RNGTTP1-201ENST00000420965 728 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.54□□□□□ -1.52
USP39Q53GS9 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.54□□□□□ -1.52
USP39Q53GS9 AC093655.2-201ENST00000425735 631 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 FABP7P2-201ENST00000429946 379 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.54□□□□□ -1.52
USP39Q53GS9 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
USP39Q53GS9 USP9YP35-201ENST00000435696 412 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 USP9YP22-201ENST00000438971 294 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 GTF3AP5-201ENST00000442645 697 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC5.54□□□□□ -1.52
USP39Q53GS9 AC007327.1-201ENST00000447461 264 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 OR51B8P-201ENST00000449892 769 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 ELOCP23-201ENST00000452014 332 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC5.54□□□□□ -1.52
USP39Q53GS9 AC069528.1-202ENST00000482888 637 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 AC023050.1-201ENST00000498198 304 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 AC138853.1-201ENST00000503549 823 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 RPL37P25-201ENST00000507308 276 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP39Q53GS9 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.54□□□□□ -1.52
USP39Q53GS9 SCARNA16.4-201ENST00000516956 187 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.54□□□□□ -1.52
USP39Q53GS9 MAL2-205ENST00000521048 575 ntTSL 4 BASIC5.54□□□□□ -1.52
USP39Q53GS9 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.54□□□□□ -1.52
USP39Q53GS9 AC011611.5-201ENST00000552477 578 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC5.54□□□□□ -1.52
USP39Q53GS9 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC5.54□□□□□ -1.52
USP39Q53GS9 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.54□□□□□ -1.52
USP39Q53GS9 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC5.54□□□□□ -1.52
USP39Q53GS9 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.54□□□□□ -1.52
USP39Q53GS9 ISCA1P3-201ENST00000577104 373 ntBASIC5.54□□□□□ -1.52
USP39Q53GS9 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC5.54□□□□□ -1.52
USP39Q53GS9 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC5.54□□□□□ -1.52
USP39Q53GS9 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.54□□□□□ -1.52
USP39Q53GS9 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms