Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU6-619P-201ENST00000365146 108 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 SNORD116-9-201ENST00000384000 95 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 SNORD116-3-201ENST00000384287 95 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 SNORD116-7-201ENST00000384404 95 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 SNORD116-5-201ENST00000384462 95 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 DUTP5-201ENST00000406790 469 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC002524.1-201ENST00000411687 547 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 OR51A3P-201ENST00000413596 924 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 RPL23AP27-201ENST00000415161 451 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 QRSL1P2-201ENST00000418582 964 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 DPRXP1-201ENST00000426312 460 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC234781.2-201ENST00000426370 994 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC005033.1-201ENST00000428904 813 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AP000936.3-201ENST00000438127 255 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AL117351.1-201ENST00000438864 766 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 RPL21P134-201ENST00000453468 483 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 RN7SL189P-201ENST00000468631 289 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 RPL7P6-201ENST00000480903 738 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 WBP1LP4-201ENST00000505043 344 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC008837.2-201ENST00000513076 418 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 ELOCP32-201ENST00000548625 324 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 HMGN2P6-201ENST00000551091 273 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC021755.1-201ENST00000559747 1447 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC079171.1-201ENST00000568788 914 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC135628.1-201ENST00000568867 534 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 RN7SL708P-201ENST00000580952 299 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 PRPF19P1-201ENST00000584766 898 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 NBR2-204ENST00000587322 63 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC069307.1-201ENST00000602820 447 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC008814.1-201ENST00000603797 406 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AL358072.1-201ENST00000604156 575 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC037198.3-201ENST00000616754 526 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC121761.2-201ENST00000617300 689 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC079248.2-201ENST00000623779 326 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC138965.3-201ENST00000623875 498 ntBASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 AC092376.2-201ENST00000622621 4116 ntBASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 AC092747.4-201ENST00000620519 1861 ntBASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 HSPA8P14-201ENST00000552265 1805 ntBASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 SNORA51.12-201ENST00000384448 134 ntBASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 ATP5F1P3-201ENST00000397213 657 ntBASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 RN7SKP213-201ENST00000410746 298 ntBASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 RN7SKP182-201ENST00000410772 298 ntBASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 SETP15-201ENST00000412724 337 ntBASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 LUZP4P1-201ENST00000415420 344 ntBASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 SEPT2P1-201ENST00000419651 180 ntBASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 GTF2IP23-201ENST00000423746 351 ntBASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 ARL4AP3-201ENST00000441452 574 ntBASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 RPL23AP76-201ENST00000441860 458 ntBASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 PRPF38AP1-201ENST00000451976 933 ntBASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 AL109741.2-201ENST00000455561 343 ntBASIC5.09□□□□□ -1.59
PTCHD3Q3KNS1 PNPLA4P1-201ENST00000458328 305 ntBASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms