Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 OR9N1P-201ENST00000491296 333 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.71□□□□□ -1.82
CHD3Q12873 IFITM8P-201ENST00000522529 394 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.71□□□□□ -1.82
CHD3Q12873 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC3.71□□□□□ -1.82
CHD3Q12873 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC3.71□□□□□ -1.82
CHD3Q12873 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.71□□□□□ -1.82
CHD3Q12873 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.71□□□□□ -1.82
CHD3Q12873 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.71□□□□□ -1.82
CHD3Q12873 BNIP3P11-201ENST00000603878 563 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 CA1-225ENST00000626824 2405 ntTSL 5 BASIC3.71□□□□□ -1.82
CHD3Q12873 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CHD3Q12873 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
CHD3Q12873 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.71□□□□□ -1.82
CHD3Q12873 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
CHD3Q12873 HCFC2P1-201ENST00000392864 1592 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CHD3Q12873 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CHD3Q12873 ST7-212ENST00000422922 1887 ntTSL 5 BASIC3.7□□□□□ -1.82
CHD3Q12873 AC139769.1-204ENST00000472297 1931 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
CHD3Q12873 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.7□□□□□ -1.82
CHD3Q12873 MGP-201ENST00000228938 694 ntTSL 3 BASIC3.7□□□□□ -1.82
CHD3Q12873 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
CHD3Q12873 PTMAP2-201ENST00000397627 327 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 RPS27AP11-201ENST00000402798 447 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.7□□□□□ -1.82
CHD3Q12873 AL035696.2-201ENST00000407941 709 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 VDAC1P9-201ENST00000412766 841 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 RPL6P29-201ENST00000414863 865 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC3.7□□□□□ -1.82
CHD3Q12873 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC3.7□□□□□ -1.82
CHD3Q12873 GOT2P5-201ENST00000433995 546 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC3.7□□□□□ -1.82
CHD3Q12873 AC069285.2-201ENST00000440210 275 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.7□□□□□ -1.82
CHD3Q12873 AC006326.1-201ENST00000445465 787 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.7□□□□□ -1.82
CHD3Q12873 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC3.7□□□□□ -1.82
CHD3Q12873 AP000827.1-201ENST00000527814 258 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.7□□□□□ -1.82
CHD3Q12873 uc_338.13-201ENST00000618243 179 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.7□□□□□ -1.82
CHD3Q12873 AC112484.5-201ENST00000624189 228 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 AC017007.4-201ENST00000503353 1352 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 SCN1A-220ENST00000641603 12506 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
CHD3Q12873 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CHD3Q12873 CDY11P-201ENST00000447168 1651 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.7□□□□□ -1.82
CHD3Q12873 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CHD3Q12873 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CHD3Q12873 RNA5SP119-201ENST00000362715 117 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 GCNT6-201ENST00000379591 934 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 HSPD1P16-201ENST00000402302 394 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 RNU6ATAC-201ENST00000408749 126 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.7□□□□□ -1.82
CHD3Q12873 AL356276.2-201ENST00000435919 558 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 RPS3AP12-201ENST00000443616 753 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 RNA5SP246-201ENST00000458909 119 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.7□□□□□ -1.82
CHD3Q12873 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC3.7□□□□□ -1.82
CHD3Q12873 AC108064.1-201ENST00000513791 460 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 IGLV3-26-201ENST00000520756 302 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC3.7□□□□□ -1.82
CHD3Q12873 AC090281.1-201ENST00000523019 276 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC3.7□□□□□ -1.82
CHD3Q12873 AC100770.1-201ENST00000532310 322 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC3.7□□□□□ -1.82
CHD3Q12873 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.7□□□□□ -1.82
CHD3Q12873 IPO5P1-202ENST00000600039 287 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.7□□□□□ -1.82
CHD3Q12873 RMST_9.1-201ENST00000619945 193 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC3.7□□□□□ -1.82
CHD3Q12873 AL357559.1-201ENST00000622228 274 ntBASIC3.7□□□□□ -1.82
CHD3Q12873 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
CHD3Q12873 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC3.69□□□□□ -1.82
CHD3Q12873 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
CHD3Q12873 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.82
CHD3Q12873 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
CHD3Q12873 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.69□□□□□ -1.82
CHD3Q12873 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CHD3Q12873 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC3.69□□□□□ -1.82
CHD3Q12873 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
CHD3Q12873 AL512430.2-201ENST00000406786 339 ntBASIC3.69□□□□□ -1.82
CHD3Q12873 AL603766.1-201ENST00000407763 664 ntBASIC3.69□□□□□ -1.82
CHD3Q12873 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC3.69□□□□□ -1.82
CHD3Q12873 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
CHD3Q12873 YY1P1-201ENST00000427625 668 ntBASIC3.69□□□□□ -1.82
CHD3Q12873 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC3.69□□□□□ -1.82
CHD3Q12873 AL450263.2-201ENST00000439400 589 ntBASIC3.69□□□□□ -1.82
CHD3Q12873 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.69□□□□□ -1.82
CHD3Q12873 VN1R32P-201ENST00000452234 905 ntBASIC3.69□□□□□ -1.82
CHD3Q12873 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC3.69□□□□□ -1.82
CHD3Q12873 RPL7P15-201ENST00000461190 712 ntBASIC3.69□□□□□ -1.82
CHD3Q12873 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.69□□□□□ -1.82
CHD3Q12873 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC3.69□□□□□ -1.82
CHD3Q12873 RN7SL812P-201ENST00000493791 279 ntBASIC3.69□□□□□ -1.82
CHD3Q12873 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms