Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNA5SP346-201ENST00000363541 121 ntBASIC6.3□□□□□ -1.4
LIG3P49916 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC6.3□□□□□ -1.4
LIG3P49916 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
LIG3P49916 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
LIG3P49916 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC6.3□□□□□ -1.4
LIG3P49916 USP9YP6-201ENST00000413550 854 ntBASIC6.3□□□□□ -1.4
LIG3P49916 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC6.3□□□□□ -1.4
LIG3P49916 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC6.3□□□□□ -1.4
LIG3P49916 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC6.3□□□□□ -1.4
LIG3P49916 AC233981.1-201ENST00000423224 461 ntBASIC6.3□□□□□ -1.4
LIG3P49916 RPS7P14-201ENST00000426405 583 ntBASIC6.3□□□□□ -1.4
LIG3P49916 AL354707.3-201ENST00000427308 331 ntBASIC6.3□□□□□ -1.4
LIG3P49916 RPS3AP38-201ENST00000435889 763 ntBASIC6.3□□□□□ -1.4
LIG3P49916 KRT8P51-201ENST00000438938 274 ntBASIC6.3□□□□□ -1.4
LIG3P49916 AL450263.2-201ENST00000439400 589 ntBASIC6.3□□□□□ -1.4
LIG3P49916 RAB11AP1-201ENST00000442978 646 ntBASIC6.3□□□□□ -1.4
LIG3P49916 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC6.3□□□□□ -1.4
LIG3P49916 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.3□□□□□ -1.4
LIG3P49916 USP9YP34-201ENST00000453983 808 ntBASIC6.3□□□□□ -1.4
LIG3P49916 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC6.3□□□□□ -1.4
LIG3P49916 OR7E99P-201ENST00000505750 922 ntBASIC6.3□□□□□ -1.4
LIG3P49916 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC6.3□□□□□ -1.4
LIG3P49916 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC6.3□□□□□ -1.4
LIG3P49916 NDUFB4P2-201ENST00000509515 391 ntBASIC6.3□□□□□ -1.4
LIG3P49916 AC010343.2-201ENST00000510162 224 ntBASIC6.3□□□□□ -1.4
LIG3P49916 MAST4-IT1-201ENST00000514241 658 ntBASIC6.3□□□□□ -1.4
LIG3P49916 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
LIG3P49916 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC6.3□□□□□ -1.4
LIG3P49916 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC6.3□□□□□ -1.4
LIG3P49916 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
LIG3P49916 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC6.3□□□□□ -1.4
LIG3P49916 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC6.3□□□□□ -1.4
LIG3P49916 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC6.3□□□□□ -1.4
LIG3P49916 NMNAT1P1-201ENST00000554095 876 ntBASIC6.3□□□□□ -1.4
LIG3P49916 AC009120.3-201ENST00000563335 499 ntBASIC6.3□□□□□ -1.4
LIG3P49916 AC002519.2-203ENST00000567043 837 ntBASIC6.3□□□□□ -1.4
LIG3P49916 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
LIG3P49916 MIR3913-1-201ENST00000577744 102 ntBASIC6.3□□□□□ -1.4
LIG3P49916 DYNLL1P1-201ENST00000595442 269 ntBASIC6.3□□□□□ -1.4
LIG3P49916 BNIP3P33-201ENST00000598912 569 ntBASIC6.3□□□□□ -1.4
LIG3P49916 AC124916.2-201ENST00000604416 224 ntBASIC6.3□□□□□ -1.4
LIG3P49916 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC6.3□□□□□ -1.4
LIG3P49916 AP001506.1-201ENST00000615444 211 ntBASIC6.3□□□□□ -1.4
LIG3P49916 AC009704.2-201ENST00000618739 483 ntBASIC6.3□□□□□ -1.4
LIG3P49916 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC6.3□□□□□ -1.4
LIG3P49916 MIR7159-201ENST00000620587 66 ntBASIC6.3□□□□□ -1.4
LIG3P49916 AC124864.2-201ENST00000624736 186 ntBASIC6.3□□□□□ -1.4
LIG3P49916 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.3□□□□□ -1.4
LIG3P49916 MIR3688-2-201ENST00000636963 87 ntBASIC6.3□□□□□ -1.4
LIG3P49916 AC114774.1-201ENST00000507410 1770 ntBASIC6.3□□□□□ -1.4
LIG3P49916 AC090017.1-201ENST00000548612 1779 ntBASIC6.3□□□□□ -1.4
LIG3P49916 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
LIG3P49916 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
LIG3P49916 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
LIG3P49916 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
LIG3P49916 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC6.29□□□□□ -1.4
LIG3P49916 RALGAPA1P1-201ENST00000443361 6232 ntBASIC6.29□□□□□ -1.4
LIG3P49916 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC6.29□□□□□ -1.4
LIG3P49916 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
LIG3P49916 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
LIG3P49916 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
LIG3P49916 SNRPEP3-201ENST00000338402 276 ntBASIC6.29□□□□□ -1.4
LIG3P49916 RNA5SP478-201ENST00000364657 115 ntBASIC6.29□□□□□ -1.4
LIG3P49916 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC6.29□□□□□ -1.4
LIG3P49916 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
LIG3P49916 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
LIG3P49916 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC6.29□□□□□ -1.4
LIG3P49916 RN7SKP121-201ENST00000410842 305 ntBASIC6.29□□□□□ -1.4
LIG3P49916 UBE2V1P14-201ENST00000415815 558 ntBASIC6.29□□□□□ -1.4
LIG3P49916 AC234782.4-201ENST00000417646 1048 ntBASIC6.29□□□□□ -1.4
LIG3P49916 AL109913.1-201ENST00000421173 514 ntBASIC6.29□□□□□ -1.4
LIG3P49916 AL158073.1-201ENST00000426848 1104 ntBASIC6.29□□□□□ -1.4
LIG3P49916 RPSAP65-201ENST00000429660 595 ntBASIC6.29□□□□□ -1.4
LIG3P49916 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
LIG3P49916 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
LIG3P49916 MTND4LP10-201ENST00000435146 291 ntBASIC6.29□□□□□ -1.4
LIG3P49916 HMGB1P31-201ENST00000437242 427 ntBASIC6.29□□□□□ -1.4
LIG3P49916 AC073614.1-201ENST00000438690 650 ntBASIC6.29□□□□□ -1.4
LIG3P49916 AL662791.1-201ENST00000441992 928 ntBASIC6.29□□□□□ -1.4
LIG3P49916 AL512326.1-201ENST00000443050 721 ntBASIC6.29□□□□□ -1.4
LIG3P49916 RPL5P7-201ENST00000444235 813 ntBASIC6.29□□□□□ -1.4
LIG3P49916 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC6.29□□□□□ -1.4
LIG3P49916 MORF4-201ENST00000447135 971 ntBASIC6.29□□□□□ -1.4
LIG3P49916 MTND5P20-201ENST00000448677 143 ntBASIC6.29□□□□□ -1.4
LIG3P49916 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC6.29□□□□□ -1.4
LIG3P49916 VPS25P1-201ENST00000455691 508 ntBASIC6.29□□□□□ -1.4
LIG3P49916 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC6.29□□□□□ -1.4
LIG3P49916 AC097493.1-201ENST00000463958 372 ntBASIC6.29□□□□□ -1.4
LIG3P49916 AC092989.1-201ENST00000481235 277 ntBASIC6.29□□□□□ -1.4
LIG3P49916 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC6.29□□□□□ -1.4
LIG3P49916 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
LIG3P49916 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC6.29□□□□□ -1.4
LIG3P49916 MINCR-206ENST00000524335 499 ntTSL 2 BASIC6.29□□□□□ -1.4
LIG3P49916 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
LIG3P49916 AP002373.2-201ENST00000541631 1060 ntBASIC6.29□□□□□ -1.4
LIG3P49916 AC006512.2-201ENST00000543250 486 ntBASIC6.29□□□□□ -1.4
LIG3P49916 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC6.29□□□□□ -1.4
LIG3P49916 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC6.29□□□□□ -1.4
LIG3P49916 MIR5697-201ENST00000578045 78 ntBASIC6.29□□□□□ -1.4
LIG3P49916 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 137.3 ms