Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC6.59□□□□□ -1.35
CUX1P39880 AC022106.2-201ENST00000620114 757 ntBASIC6.59□□□□□ -1.35
CUX1P39880 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
CUX1P39880 PRO1804-201ENST00000623780 2050 ntBASIC6.59□□□□□ -1.36
CUX1P39880 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
CUX1P39880 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC6.58□□□□□ -1.36
CUX1P39880 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
CUX1P39880 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
CUX1P39880 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
CUX1P39880 MTND2P15-201ENST00000418575 892 ntBASIC6.58□□□□□ -1.36
CUX1P39880 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC6.58□□□□□ -1.36
CUX1P39880 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC6.58□□□□□ -1.36
CUX1P39880 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC6.58□□□□□ -1.36
CUX1P39880 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC6.58□□□□□ -1.36
CUX1P39880 AC007458.1-201ENST00000542812 373 ntBASIC6.58□□□□□ -1.36
CUX1P39880 AC015922.4-201ENST00000612568 690 ntBASIC6.58□□□□□ -1.36
CUX1P39880 AC010480.1-201ENST00000624823 684 ntBASIC6.58□□□□□ -1.36
CUX1P39880 AL356274.2-201ENST00000624379 3752 ntBASIC6.58□□□□□ -1.36
CUX1P39880 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
CUX1P39880 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC6.58□□□□□ -1.36
CUX1P39880 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
CUX1P39880 AC023632.6-201ENST00000624338 2177 ntBASIC6.57□□□□□ -1.36
CUX1P39880 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC6.57□□□□□ -1.36
CUX1P39880 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CUX1P39880 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC6.57□□□□□ -1.36
CUX1P39880 RPS23P10-201ENST00000416185 486 ntBASIC6.57□□□□□ -1.36
CUX1P39880 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CUX1P39880 RPS4XP10-201ENST00000465034 731 ntBASIC6.57□□□□□ -1.36
CUX1P39880 CAB39P1-201ENST00000502277 460 ntBASIC6.57□□□□□ -1.36
CUX1P39880 SNORA70.24-201ENST00000517233 118 ntBASIC6.57□□□□□ -1.36
CUX1P39880 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC6.57□□□□□ -1.36
CUX1P39880 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC6.57□□□□□ -1.36
CUX1P39880 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC6.57□□□□□ -1.36
CUX1P39880 AL031666.3-201ENST00000609320 1006 ntBASIC6.57□□□□□ -1.36
CUX1P39880 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
CUX1P39880 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
CUX1P39880 MARK2P15-201ENST00000432204 2186 ntBASIC6.57□□□□□ -1.36
CUX1P39880 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
CUX1P39880 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC6.57□□□□□ -1.36
CUX1P39880 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
CUX1P39880 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC6.56□□□□□ -1.36
CUX1P39880 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CUX1P39880 RPL7P60-201ENST00000397636 735 ntBASIC6.56□□□□□ -1.36
CUX1P39880 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC6.56□□□□□ -1.36
CUX1P39880 RPS17P13-201ENST00000448974 407 ntBASIC6.56□□□□□ -1.36
CUX1P39880 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC6.56□□□□□ -1.36
CUX1P39880 AC100770.1-201ENST00000532310 322 ntBASIC6.56□□□□□ -1.36
CUX1P39880 AC037471.2-201ENST00000564941 598 ntBASIC6.56□□□□□ -1.36
CUX1P39880 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC6.56□□□□□ -1.36
CUX1P39880 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC6.56□□□□□ -1.36
CUX1P39880 AP002001.2-201ENST00000529025 1469 ntBASIC6.56□□□□□ -1.36
CUX1P39880 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC6.56□□□□□ -1.36
CUX1P39880 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
CUX1P39880 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CUX1P39880 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC6.56□□□□□ -1.36
CUX1P39880 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CUX1P39880 SPATA31D2P-201ENST00000429999 4388 ntBASIC6.56□□□□□ -1.36
CUX1P39880 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CUX1P39880 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC6.56□□□□□ -1.36
CUX1P39880 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC6.55□□□□□ -1.36
CUX1P39880 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC6.55□□□□□ -1.36
CUX1P39880 RPL7P24-201ENST00000493052 752 ntBASIC6.55□□□□□ -1.36
CUX1P39880 OR8I1P-201ENST00000529291 931 ntBASIC6.55□□□□□ -1.36
CUX1P39880 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC6.55□□□□□ -1.36
CUX1P39880 SLC25A36P1-201ENST00000590111 465 ntBASIC6.55□□□□□ -1.36
CUX1P39880 AL031985.2-201ENST00000600955 480 ntBASIC6.55□□□□□ -1.36
CUX1P39880 AC079684.1-201ENST00000621405 437 ntBASIC6.55□□□□□ -1.36
CUX1P39880 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CUX1P39880 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
CUX1P39880 AL137918.1-201ENST00000624542 1922 ntBASIC6.55□□□□□ -1.36
CUX1P39880 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC6.55□□□□□ -1.36
CUX1P39880 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
CUX1P39880 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
CUX1P39880 AL590609.2-201ENST00000421430 368 ntBASIC6.55□□□□□ -1.36
CUX1P39880 HIGD1AP4-201ENST00000430194 280 ntBASIC6.55□□□□□ -1.36
CUX1P39880 TMX2P1-201ENST00000436507 708 ntBASIC6.55□□□□□ -1.36
CUX1P39880 GAS5-223ENST00000452197 483 ntTSL 3 BASIC6.55□□□□□ -1.36
CUX1P39880 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC6.55□□□□□ -1.36
CUX1P39880 SUN3-208ENST00000453192 801 ntTSL 5 BASIC6.55□□□□□ -1.36
CUX1P39880 AC084759.1-201ENST00000561168 290 ntBASIC6.55□□□□□ -1.36
CUX1P39880 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
CUX1P39880 MIR5195-201ENST00000583555 115 ntBASIC6.55□□□□□ -1.36
CUX1P39880 AC055839.1-201ENST00000634467 498 ntBASIC6.55□□□□□ -1.36
CUX1P39880 AC119674.1-207ENST00000641355 633 ntBASIC6.55□□□□□ -1.36
CUX1P39880 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC6.55□□□□□ -1.36
CUX1P39880 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC6.54□□□□□ -1.36
CUX1P39880 MTND5P1-201ENST00000445440 1375 ntBASIC6.54□□□□□ -1.36
CUX1P39880 MTCO1P12-201ENST00000414273 1543 ntBASIC6.54□□□□□ -1.36
CUX1P39880 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
CUX1P39880 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CUX1P39880 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
CUX1P39880 SNORA3.3-201ENST00000408712 125 ntBASIC6.54□□□□□ -1.36
CUX1P39880 AL035423.1-201ENST00000420331 213 ntBASIC6.54□□□□□ -1.36
CUX1P39880 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC6.54□□□□□ -1.36
CUX1P39880 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC6.54□□□□□ -1.36
CUX1P39880 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC6.54□□□□□ -1.36
CUX1P39880 AC026427.2-201ENST00000506228 536 ntBASIC6.54□□□□□ -1.36
CUX1P39880 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC6.54□□□□□ -1.36
CUX1P39880 AC023509.5-201ENST00000617434 807 ntBASIC6.54□□□□□ -1.36
CUX1P39880 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC6.54□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms