Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXC9P31274 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC5.54□□□□□ -1.52
HOXC9P31274 MTND3P24-201ENST00000506306 329 ntBASIC5.54□□□□□ -1.52
HOXC9P31274 AC008628.1-201ENST00000508663 265 ntBASIC5.54□□□□□ -1.52
HOXC9P31274 RFPL4AP3-201ENST00000515267 345 ntBASIC5.54□□□□□ -1.52
HOXC9P31274 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXC9P31274 CYCSP28-201ENST00000534284 321 ntBASIC5.54□□□□□ -1.52
HOXC9P31274 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXC9P31274 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC5.54□□□□□ -1.52
HOXC9P31274 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXC9P31274 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXC9P31274 AC012213.4-201ENST00000606457 354 ntBASIC5.54□□□□□ -1.52
HOXC9P31274 AP002371.2-201ENST00000624450 503 ntBASIC5.54□□□□□ -1.52
HOXC9P31274 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXC9P31274 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.54□□□□□ -1.52
HOXC9P31274 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HOXC9P31274 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXC9P31274 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.54□□□□□ -1.52
HOXC9P31274 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC5.53□□□□□ -1.52
HOXC9P31274 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXC9P31274 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
HOXC9P31274 ACEA_U3.1-201ENST00000363057 217 ntBASIC5.53□□□□□ -1.52
HOXC9P31274 SNORA62.3-201ENST00000365110 153 ntBASIC5.53□□□□□ -1.52
HOXC9P31274 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXC9P31274 MIR1179-201ENST00000408703 91 ntBASIC5.53□□□□□ -1.52
HOXC9P31274 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.53□□□□□ -1.52
HOXC9P31274 AC007389.2-201ENST00000434630 306 ntBASIC5.53□□□□□ -1.52
HOXC9P31274 TBCAP1-201ENST00000436520 327 ntBASIC5.53□□□□□ -1.52
HOXC9P31274 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HOXC9P31274 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.53□□□□□ -1.52
HOXC9P31274 AL353718.1-201ENST00000451028 517 ntBASIC5.53□□□□□ -1.52
HOXC9P31274 MTND2P39-201ENST00000457230 764 ntBASIC5.53□□□□□ -1.52
HOXC9P31274 SNRPCP3-201ENST00000474888 476 ntBASIC5.53□□□□□ -1.52
HOXC9P31274 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC5.53□□□□□ -1.52
HOXC9P31274 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.53□□□□□ -1.52
HOXC9P31274 AC025768.1-201ENST00000510057 267 ntBASIC5.53□□□□□ -1.52
HOXC9P31274 AC108157.1-201ENST00000510511 539 ntBASIC5.53□□□□□ -1.52
HOXC9P31274 AC138938.1-201ENST00000515431 782 ntBASIC5.53□□□□□ -1.52
HOXC9P31274 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC5.53□□□□□ -1.52
HOXC9P31274 AC027176.2-201ENST00000559166 746 ntBASIC5.53□□□□□ -1.52
HOXC9P31274 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC5.53□□□□□ -1.52
HOXC9P31274 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HOXC9P31274 AC015871.5-202ENST00000623252 701 ntBASIC5.53□□□□□ -1.52
HOXC9P31274 AL138960.2-201ENST00000625145 535 ntBASIC5.53□□□□□ -1.52
HOXC9P31274 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
HOXC9P31274 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXC9P31274 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HOXC9P31274 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.53□□□□□ -1.52
HOXC9P31274 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC5.53□□□□□ -1.52
HOXC9P31274 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.52□□□□□ -1.53
HOXC9P31274 EOGT-210ENST00000615922 1931 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXC9P31274 VDAC1P9-201ENST00000412766 841 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXC9P31274 AL451062.2-201ENST00000427515 271 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXC9P31274 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXC9P31274 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXC9P31274 RPL38P1-201ENST00000460914 211 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 AC104629.2-201ENST00000468627 598 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXC9P31274 SSR3-208ENST00000496050 579 ntTSL 4 BASIC5.52□□□□□ -1.53
HOXC9P31274 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXC9P31274 FABP5P6-201ENST00000510588 409 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXC9P31274 OR4R2P-201ENST00000530815 597 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
HOXC9P31274 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXC9P31274 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXC9P31274 AL121839.1-201ENST00000556233 1185 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 MTND4LP25-201ENST00000570218 163 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 HNRNPCP4-201ENST00000571636 900 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 MIR5685-201ENST00000579080 79 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC5.52□□□□□ -1.53
HOXC9P31274 AC067838.1-201ENST00000606064 577 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXC9P31274 AC135803.1-201ENST00000608748 565 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXC9P31274 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXC9P31274 AC012442.3-202ENST00000636742 206 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXC9P31274 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXC9P31274 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXC9P31274 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC5.52□□□□□ -1.53
HOXC9P31274 AC016588.2-201ENST00000632484 3021 ntBASIC5.52□□□□□ -1.53
HOXC9P31274 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
HOXC9P31274 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 AL022322.2-201ENST00000624072 20397 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXC9P31274 RNA5SP22-201ENST00000365393 109 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 AL356057.1-202ENST00000402263 756 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXC9P31274 LINC01881-201ENST00000416103 412 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXC9P31274 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC9P31274 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC9P31274 AL691449.1-201ENST00000426570 421 ntBASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms