Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CYP4A43P-201ENST00000568156 121 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.53□□□□□ -1.68
PTPN4P29074 VN1R84P-201ENST00000593697 235 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 AC093765.1-201ENST00000603758 881 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 AL096803.3-201ENST00000609032 532 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC4.53□□□□□ -1.68
PTPN4P29074 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.53□□□□□ -1.68
PTPN4P29074 AC011472.4-201ENST00000615848 491 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 AL138721.1-201ENST00000616756 179 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 LINC00901.1-201ENST00000617252 152 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 AC011266.1-201ENST00000624119 3569 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 AL132640.2-201ENST00000559968 1698 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PTPN4P29074 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
PTPN4P29074 VN2R3P-201ENST00000422626 1412 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.53□□□□□ -1.68
PTPN4P29074 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.52□□□□□ -1.69
PTPN4P29074 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.52□□□□□ -1.69
PTPN4P29074 KARSP3-201ENST00000571212 1504 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.52□□□□□ -1.69
PTPN4P29074 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.52□□□□□ -1.69
PTPN4P29074 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
PTPN4P29074 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
PTPN4P29074 AC126755.2-208ENST00000327792 462 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
PTPN4P29074 AC138969.1-213ENST00000331436 462 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 AL589826.1-201ENST00000340697 249 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.52□□□□□ -1.69
PTPN4P29074 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.52□□□□□ -1.69
PTPN4P29074 AL049697.2-201ENST00000403708 294 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 RNA5SP39-201ENST00000411245 120 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 RANP4-201ENST00000413361 655 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
PTPN4P29074 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
PTPN4P29074 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.52□□□□□ -1.69
PTPN4P29074 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.52□□□□□ -1.69
PTPN4P29074 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4.52□□□□□ -1.69
PTPN4P29074 CEACAMP6-201ENST00000452007 574 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 FGF7P3-201ENST00000454645 303 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.52□□□□□ -1.69
PTPN4P29074 AC005229.2-201ENST00000456995 399 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 AC010683.1-201ENST00000473673 378 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 RPS6P4-201ENST00000494693 758 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.52□□□□□ -1.69
PTPN4P29074 PRELID3BP5-201ENST00000508612 460 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 HMGB3P13-201ENST00000511263 607 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 RNU1-6P-201ENST00000516290 144 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC4.52□□□□□ -1.69
PTPN4P29074 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC4.52□□□□□ -1.69
PTPN4P29074 AC009643.1-201ENST00000532030 391 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.52□□□□□ -1.69
PTPN4P29074 DYNLL1P4-201ENST00000549314 266 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC4.52□□□□□ -1.69
PTPN4P29074 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.52□□□□□ -1.69
PTPN4P29074 AC021483.2-201ENST00000567415 758 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.52□□□□□ -1.69
PTPN4P29074 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC4.52□□□□□ -1.69
PTPN4P29074 AC110743.1-201ENST00000584870 478 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.52□□□□□ -1.69
PTPN4P29074 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.52□□□□□ -1.69
PTPN4P29074 AC015849.2-201ENST00000605738 409 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 AC016957.2-201ENST00000616998 848 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.52□□□□□ -1.69
PTPN4P29074 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.52□□□□□ -1.69
PTPN4P29074 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.52□□□□□ -1.69
PTPN4P29074 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
PTPN4P29074 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.52□□□□□ -1.69
PTPN4P29074 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.52□□□□□ -1.69
PTPN4P29074 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.52□□□□□ -1.69
PTPN4P29074 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.52□□□□□ -1.69
PTPN4P29074 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
PTPN4P29074 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.52□□□□□ -1.69
PTPN4P29074 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
PTPN4P29074 AC074029.4-201ENST00000624796 1859 ntBASIC4.52□□□□□ -1.69
PTPN4P29074 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
PTPN4P29074 AC016588.2-201ENST00000632484 3021 ntBASIC4.51□□□□□ -1.69
PTPN4P29074 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.51□□□□□ -1.69
PTPN4P29074 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
PTPN4P29074 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.51□□□□□ -1.69
PTPN4P29074 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
PTPN4P29074 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
PTPN4P29074 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.51□□□□□ -1.69
PTPN4P29074 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
PTPN4P29074 RNU1-15P-201ENST00000353977 144 ntBASIC4.51□□□□□ -1.69
PTPN4P29074 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
PTPN4P29074 RNU1-44P-201ENST00000384453 163 ntBASIC4.51□□□□□ -1.69
PTPN4P29074 MTATP6P19-201ENST00000413797 659 ntBASIC4.51□□□□□ -1.69
PTPN4P29074 RPS27AP7-201ENST00000422792 455 ntBASIC4.51□□□□□ -1.69
PTPN4P29074 DPY19L1P2-201ENST00000426647 915 ntBASIC4.51□□□□□ -1.69
PTPN4P29074 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.51□□□□□ -1.69
PTPN4P29074 ARL2BPP10-201ENST00000446487 531 ntBASIC4.51□□□□□ -1.69
PTPN4P29074 AC104306.1-201ENST00000449702 371 ntBASIC4.51□□□□□ -1.69
PTPN4P29074 AL451050.1-201ENST00000450126 415 ntBASIC4.51□□□□□ -1.69
PTPN4P29074 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.51□□□□□ -1.69
PTPN4P29074 FTH1P2-201ENST00000466086 412 ntBASIC4.51□□□□□ -1.69
PTPN4P29074 SUMO1P1-201ENST00000497904 306 ntBASIC4.51□□□□□ -1.69
PTPN4P29074 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.51□□□□□ -1.69
PTPN4P29074 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
PTPN4P29074 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC4.51□□□□□ -1.69
PTPN4P29074 HNRNPKP5-201ENST00000515300 253 ntBASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms