Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 OR8X1P-201ENST00000534542 869 ntBASIC3.26□□□□□ -1.89
HLA-DMBP28068 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 AC068446.3-201ENST00000555285 382 ntBASIC3.26□□□□□ -1.89
HLA-DMBP28068 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HLA-DMBP28068 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HLA-DMBP28068 AC097504.1-201ENST00000515103 2415 ntBASIC3.26□□□□□ -1.89
HLA-DMBP28068 AL031985.3-201ENST00000565390 2449 ntBASIC3.26□□□□□ -1.89
HLA-DMBP28068 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HLA-DMBP28068 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
HLA-DMBP28068 ST7-212ENST00000422922 1887 ntTSL 5 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HLA-DMBP28068 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HLA-DMBP28068 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HLA-DMBP28068 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HLA-DMBP28068 ACTR3BP2-202ENST00000623630 1338 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.25□□□□□ -1.89
HLA-DMBP28068 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 MIR331-201ENST00000362302 94 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 RNU4-39P-201ENST00000362455 127 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 MIR3065-201ENST00000390137 79 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HLA-DMBP28068 AMMECR1LP1-201ENST00000415152 841 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 TRIM60P17-201ENST00000415181 719 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 AL161631.1-201ENST00000417933 486 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 RPL12P34-201ENST00000424532 479 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 AC011998.1-201ENST00000433403 117 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 TRIM60P9Y-201ENST00000438459 816 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 TRIM60P11Y-201ENST00000445313 801 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 EIF2S2P4-201ENST00000461070 984 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 RPS23P7-201ENST00000466210 444 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 AC053481.1-201ENST00000467217 306 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 AC026979.1-201ENST00000492525 396 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 OSBPL9P2-201ENST00000526582 1228 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 DEFB109D-201ENST00000529497 240 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 AC018552.3-201ENST00000567416 561 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HLA-DMBP28068 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 AC005191.1-201ENST00000603950 358 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 AC006338.2-201ENST00000616864 791 ntBASIC3.25□□□□□ -1.89
HLA-DMBP28068 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HLA-DMBP28068 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
HLA-DMBP28068 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HLA-DMBP28068 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HLA-DMBP28068 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
HLA-DMBP28068 LINC02471-203ENST00000641941 4752 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HLA-DMBP28068 AC007390.2-201ENST00000606229 3803 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 AC125257.1-201ENST00000560400 2930 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HLA-DMBP28068 NRK-204ENST00000540278 1687 ntTSL 2 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 AC110792.3-201ENST00000595906 1614 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 AC126755.2-208ENST00000327792 462 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 AC138969.1-213ENST00000331436 462 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 RNA5SP175-201ENST00000364275 119 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 ELOCP19-201ENST00000411919 318 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HLA-DMBP28068 AL158073.1-201ENST00000426848 1104 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 AC091390.1-201ENST00000433904 331 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 EIF2S2P2-201ENST00000447161 982 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 EIF4A1P11-201ENST00000451239 222 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 RPS27AP16-201ENST00000492222 470 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 RN7SL812P-201ENST00000493791 279 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms