Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD4P09016 PDSS1P1-201ENST00000422953 1114 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 ELOCP6-201ENST00000429066 328 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 ZNF965P-201ENST00000432501 817 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 AC093716.1-201ENST00000435923 377 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 RNF2P1-201ENST00000442955 1010 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 AC104306.1-201ENST00000449702 371 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXD4P09016 Z95152.1-201ENST00000453556 656 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 MTND2P28-201ENST00000457540 1044 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 ELOCP12-201ENST00000458706 328 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
HOXD4P09016 AC078857.1-201ENST00000469870 667 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 AC007537.2-201ENST00000472093 511 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 AC093663.2-201ENST00000484625 313 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 AC091868.1-201ENST00000508746 304 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD4P09016 RN7SKP157-201ENST00000516174 282 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 IGHV3-63-201ENST00000518422 341 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC4.23□□□□□ -1.73
HOXD4P09016 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD4P09016 BNIP3P5-201ENST00000562290 498 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 SULT1C2P2-201ENST00000562517 294 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXD4P09016 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXD4P09016 MLECP1-201ENST00000615893 709 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 AP005019.3-201ENST00000620418 560 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 AL137100.1-201ENST00000556703 1620 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD4P09016 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD4P09016 AL445487.1-201ENST00000415694 1580 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD4P09016 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD4P09016 MFSD8-220ENST00000641243 1422 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD4P09016 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD4P09016 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD4P09016 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD4P09016 AL512430.2-201ENST00000406786 339 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD4P09016 AC004552.1-201ENST00000419089 348 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 RPL17P36-201ENST00000420302 549 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.22□□□□□ -1.73
HOXD4P09016 AL592293.2-201ENST00000422292 996 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 AL645608.4-201ENST00000423619 154 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.22□□□□□ -1.73
HOXD4P09016 AC234779.1-201ENST00000425910 285 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 MORF4L1P7-201ENST00000426038 703 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD4P09016 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD4P09016 MTCYBP29-201ENST00000436327 1006 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD4P09016 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD4P09016 AL513321.1-201ENST00000441175 761 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD4P09016 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD4P09016 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD4P09016 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.22□□□□□ -1.73
HOXD4P09016 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD4P09016 RPS26P3-201ENST00000470205 348 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 RPL23AP2-201ENST00000471227 466 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 AC090543.2-201ENST00000483963 348 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 AC004057.1-201ENST00000485827 348 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 AC013356.1-201ENST00000489027 564 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD4P09016 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD4P09016 C1GALT1P2-201ENST00000510813 1104 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 AC093840.1-201ENST00000511599 336 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 AC015795.1-201ENST00000513669 327 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD4P09016 MTND1P6-201ENST00000523621 946 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC4.22□□□□□ -1.73
HOXD4P09016 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD4P09016 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXD4P09016 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD4P09016 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.22□□□□□ -1.73
HOXD4P09016 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.22□□□□□ -1.73
HOXD4P09016 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD4P09016 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.22□□□□□ -1.73
HOXD4P09016 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD4P09016 RPL12P25-202ENST00000598100 674 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 AC068790.5-201ENST00000602741 355 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 AC084373.1-201ENST00000603311 235 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD4P09016 AL022401.1-201ENST00000619498 108 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 AL669942.2-201ENST00000620352 697 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 AC097460.3-201ENST00000623099 442 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 AC010872.1-201ENST00000624225 675 ntBASIC4.22□□□□□ -1.73
HOXD4P09016 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD4P09016 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD4P09016 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD4P09016 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD4P09016 MTND4P9-201ENST00000507819 1346 ntBASIC4.21□□□□□ -1.73
HOXD4P09016 DDX18P5-201ENST00000534547 1306 ntBASIC4.21□□□□□ -1.73
HOXD4P09016 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.73
HOXD4P09016 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD4P09016 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD4P09016 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD4P09016 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
HOXD4P09016 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms