Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AL645927.2-201ENST00000618350 349 ntBASIC4.39□□□□□ -1.71
CCDC42Q96M95 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC42Q96M95 AL139254.3-201ENST00000641097 674 ntBASIC4.39□□□□□ -1.71
CCDC42Q96M95 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC42Q96M95 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC42Q96M95 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC42Q96M95 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC42Q96M95 AC090971.4-201ENST00000560291 1800 ntBASIC4.39□□□□□ -1.71
CCDC42Q96M95 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC42Q96M95 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC42Q96M95 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.39□□□□□ -1.71
CCDC42Q96M95 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
CCDC42Q96M95 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC42Q96M95 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC42Q96M95 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC42Q96M95 RN7SKP182-201ENST00000410772 298 ntBASIC4.38□□□□□ -1.71
CCDC42Q96M95 RPS29P17-201ENST00000430795 166 ntBASIC4.38□□□□□ -1.71
CCDC42Q96M95 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC42Q96M95 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC42Q96M95 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC42Q96M95 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
CCDC42Q96M95 KRT19P6-201ENST00000510983 209 ntBASIC4.38□□□□□ -1.71
CCDC42Q96M95 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC42Q96M95 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC42Q96M95 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.38□□□□□ -1.71
CCDC42Q96M95 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC42Q96M95 AC107016.1-201ENST00000550463 337 ntBASIC4.38□□□□□ -1.71
CCDC42Q96M95 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC42Q96M95 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC42Q96M95 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC42Q96M95 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC42Q96M95 AC004825.2-201ENST00000616634 455 ntBASIC4.38□□□□□ -1.71
CCDC42Q96M95 AC067852.7-201ENST00000623270 535 ntBASIC4.38□□□□□ -1.71
CCDC42Q96M95 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC42Q96M95 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
CCDC42Q96M95 AC134882.1-201ENST00000603738 1676 ntBASIC4.38□□□□□ -1.71
CCDC42Q96M95 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC42Q96M95 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC42Q96M95 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC42Q96M95 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC42Q96M95 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC42Q96M95 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC42Q96M95 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC42Q96M95 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC42Q96M95 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC42Q96M95 AL589994.1-201ENST00000404962 340 ntBASIC4.37□□□□□ -1.71
CCDC42Q96M95 MIR1251-201ENST00000408552 70 ntBASIC4.37□□□□□ -1.71
CCDC42Q96M95 USP12PY-201ENST00000427677 1064 ntBASIC4.37□□□□□ -1.71
CCDC42Q96M95 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC42Q96M95 AL358472.1-201ENST00000431295 329 ntBASIC4.37□□□□□ -1.71
CCDC42Q96M95 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC42Q96M95 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC42Q96M95 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC42Q96M95 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC42Q96M95 AL133477.1-201ENST00000457472 514 ntBASIC4.37□□□□□ -1.71
CCDC42Q96M95 RPL23AP24-201ENST00000458203 385 ntBASIC4.37□□□□□ -1.71
CCDC42Q96M95 RNA5SP246-201ENST00000458909 119 ntBASIC4.37□□□□□ -1.71
CCDC42Q96M95 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC42Q96M95 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
CCDC42Q96M95 AC026726.1-201ENST00000512859 601 ntBASIC4.37□□□□□ -1.71
CCDC42Q96M95 AC010342.1-201ENST00000514047 877 ntBASIC4.37□□□□□ -1.71
CCDC42Q96M95 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC42Q96M95 OR7E10P-201ENST00000526420 991 ntBASIC4.37□□□□□ -1.71
CCDC42Q96M95 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC42Q96M95 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC42Q96M95 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC42Q96M95 AC114878.2-201ENST00000604863 1251 ntBASIC4.37□□□□□ -1.71
CCDC42Q96M95 HMGB1P50-201ENST00000605814 607 ntBASIC4.37□□□□□ -1.71
CCDC42Q96M95 AL359715.5-201ENST00000623431 443 ntBASIC4.37□□□□□ -1.71
CCDC42Q96M95 AP001784.1-201ENST00000624107 428 ntBASIC4.37□□□□□ -1.71
CCDC42Q96M95 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC42Q96M95 IPO8P1-201ENST00000455509 3109 ntBASIC4.37□□□□□ -1.71
CCDC42Q96M95 AC116667.1-201ENST00000604855 2072 ntBASIC4.37□□□□□ -1.71
CCDC42Q96M95 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC42Q96M95 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC42Q96M95 AC017007.4-201ENST00000503353 1352 ntBASIC4.37□□□□□ -1.71
CCDC42Q96M95 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC42Q96M95 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC42Q96M95 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC42Q96M95 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 MIR365B-201ENST00000362317 111 ntBASIC4.36□□□□□ -1.71
CCDC42Q96M95 RNVU1-6-201ENST00000364688 164 ntBASIC4.36□□□□□ -1.71
CCDC42Q96M95 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 RNU1-89P-201ENST00000384592 164 ntBASIC4.36□□□□□ -1.71
CCDC42Q96M95 AL035696.2-201ENST00000407941 709 ntBASIC4.36□□□□□ -1.71
CCDC42Q96M95 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 AC119751.6-201ENST00000416712 186 ntBASIC4.36□□□□□ -1.71
CCDC42Q96M95 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 RPS3AP54-201ENST00000435535 734 ntBASIC4.36□□□□□ -1.71
CCDC42Q96M95 AF228730.2-201ENST00000438784 848 ntBASIC4.36□□□□□ -1.71
CCDC42Q96M95 AC009963.2-201ENST00000453431 138 ntBASIC4.36□□□□□ -1.71
CCDC42Q96M95 AC018638.3-201ENST00000461273 132 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms