Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AL591926.8-201ENST00000616876 211 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 AL590396.2-201ENST00000636511 1041 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VMP1Q96GC9 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VMP1Q96GC9 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
VMP1Q96GC9 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VMP1Q96GC9 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
VMP1Q96GC9 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VMP1Q96GC9 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VMP1Q96GC9 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
VMP1Q96GC9 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.7□□□□□ -1.66
VMP1Q96GC9 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
VMP1Q96GC9 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
VMP1Q96GC9 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VMP1Q96GC9 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
VMP1Q96GC9 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 RNA5SP428-201ENST00000365129 132 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 DNAJC19P6-201ENST00000401853 280 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 AC013429.2-201ENST00000418798 781 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 RPL12P3-201ENST00000440080 396 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 ARL4AP3-201ENST00000441452 574 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 RPL34P20-201ENST00000442771 351 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 RPL7AP61-201ENST00000443410 636 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 AL356981.1-201ENST00000454879 684 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 RN7SL826P-201ENST00000479724 288 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 DEFB109F-201ENST00000491870 277 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 RN7SL441P-201ENST00000492388 296 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 RPL37AP8-201ENST00000494116 276 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 AC098799.3-201ENST00000506095 438 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 ENPP7P9-201ENST00000514456 627 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 RNU6-1102P-201ENST00000516149 96 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 NDUFB4P11-201ENST00000560510 395 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 AL671309.1-201ENST00000603750 544 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 IMMP1LP1-201ENST00000605170 488 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 AL359535.1-201ENST00000612100 1087 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 uc_338.18-201ENST00000615451 175 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 FRG1HP-204ENST00000617940 757 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 MIR6730-201ENST00000622213 67 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 AL353662.3-201ENST00000625131 237 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 AC017104.5-201ENST00000637647 639 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
VMP1Q96GC9 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VMP1Q96GC9 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 AC046144.1-201ENST00000478559 1853 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
VMP1Q96GC9 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 DHX9P1-201ENST00000436565 3076 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.7□□□□□ -1.66
VMP1Q96GC9 DCAF13P1-201ENST00000495256 1330 ntBASIC4.7□□□□□ -1.66
VMP1Q96GC9 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
VMP1Q96GC9 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.69□□□□□ -1.66
VMP1Q96GC9 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
VMP1Q96GC9 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
VMP1Q96GC9 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.69□□□□□ -1.66
VMP1Q96GC9 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
VMP1Q96GC9 AC103591.2-201ENST00000265259 766 ntBASIC4.69□□□□□ -1.66
VMP1Q96GC9 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
VMP1Q96GC9 GCNT6-201ENST00000379591 934 ntBASIC4.69□□□□□ -1.66
VMP1Q96GC9 SNORA51.12-201ENST00000384448 134 ntBASIC4.69□□□□□ -1.66
VMP1Q96GC9 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VMP1Q96GC9 PRRC2CP1-201ENST00000404428 159 ntBASIC4.69□□□□□ -1.66
VMP1Q96GC9 AP002530.1-201ENST00000405705 684 ntBASIC4.69□□□□□ -1.66
VMP1Q96GC9 RNA5SP146-201ENST00000410743 123 ntBASIC4.69□□□□□ -1.66
VMP1Q96GC9 NUP35P2-201ENST00000416748 943 ntBASIC4.69□□□□□ -1.66
VMP1Q96GC9 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms