Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AL121594.5-201ENST00000631724 573 ntBASIC4.57□□□□□ -1.68
BEST3Q8N1M1 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
BEST3Q8N1M1 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
BEST3Q8N1M1 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
BEST3Q8N1M1 MAPK10-263ENST00000641052 4307 ntBASIC4.57□□□□□ -1.68
BEST3Q8N1M1 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
BEST3Q8N1M1 NSRP1P1-201ENST00000444067 1693 ntBASIC4.57□□□□□ -1.68
BEST3Q8N1M1 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.57□□□□□ -1.68
BEST3Q8N1M1 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
BEST3Q8N1M1 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 RNU6-1339P-201ENST00000363574 91 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 SNORA56-201ENST00000383966 129 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 RNU6-317P-201ENST00000384031 107 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 Y_RNA.578-201ENST00000390903 88 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 RNA5SP113-201ENST00000410486 84 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 GTF2IP5-201ENST00000414608 731 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 RPS7P9-201ENST00000414704 586 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AC007559.1-201ENST00000428736 355 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 MTND1P33-201ENST00000446251 917 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 SLC25A18P1-201ENST00000449385 454 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 MTND2P8-201ENST00000450555 1025 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 RPL23AP12-201ENST00000467573 473 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 TRBV8-2-201ENST00000475637 270 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 RPL21P6-201ENST00000479171 504 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 RPL5P22-201ENST00000480199 884 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 RN7SL441P-201ENST00000492388 296 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 HPRT1P2-201ENST00000505250 544 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AC063949.1-201ENST00000552900 865 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AL390726.5-202ENST00000564800 256 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 MIR4330-201ENST00000579077 105 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AC098935.2-201ENST00000604222 466 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AC009974.1-201ENST00000608881 455 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 U6.48-201ENST00000618523 106 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AC123767.1-202ENST00000620407 817 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 ECM1P2-201ENST00000503354 1577 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 PCF11-AS1-201ENST00000602322 1516 ntBASIC4.56□□□□□ -1.68
BEST3Q8N1M1 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
BEST3Q8N1M1 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
BEST3Q8N1M1 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
BEST3Q8N1M1 RNF6P1-201ENST00000444889 1784 ntBASIC4.55□□□□□ -1.68
BEST3Q8N1M1 MTCO1P6-201ENST00000481192 1384 ntBASIC4.55□□□□□ -1.68
BEST3Q8N1M1 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC4.55□□□□□ -1.68
BEST3Q8N1M1 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.55□□□□□ -1.68
BEST3Q8N1M1 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
BEST3Q8N1M1 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
BEST3Q8N1M1 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
BEST3Q8N1M1 RNU6-353P-201ENST00000364266 108 ntBASIC4.55□□□□□ -1.68
BEST3Q8N1M1 RNVU1-6-201ENST00000364688 164 ntBASIC4.55□□□□□ -1.68
BEST3Q8N1M1 MTCO1P56-201ENST00000401674 224 ntBASIC4.55□□□□□ -1.68
BEST3Q8N1M1 AL359643.1-201ENST00000404109 423 ntBASIC4.55□□□□□ -1.68
BEST3Q8N1M1 MIR1271-201ENST00000408537 86 ntBASIC4.55□□□□□ -1.68
BEST3Q8N1M1 BTF3P8-201ENST00000414577 526 ntBASIC4.55□□□□□ -1.68
BEST3Q8N1M1 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.55□□□□□ -1.68
BEST3Q8N1M1 TAF13P2-201ENST00000416876 286 ntBASIC4.55□□□□□ -1.68
BEST3Q8N1M1 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC4.55□□□□□ -1.68
BEST3Q8N1M1 AC048351.1-201ENST00000420064 602 ntBASIC4.55□□□□□ -1.68
BEST3Q8N1M1 AC004074.1-201ENST00000421810 1063 ntBASIC4.55□□□□□ -1.68
BEST3Q8N1M1 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC4.55□□□□□ -1.68
BEST3Q8N1M1 MTCYBP15-201ENST00000433123 1127 ntBASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 134 ms