Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RNA5SP397-201ENST00000391323 118 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 RHEBP3-201ENST00000411920 351 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 AL512326.1-201ENST00000443050 721 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 VN1R25P-201ENST00000443385 738 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 EEF1B2P5-201ENST00000444820 548 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 AC144530.1-201ENST00000452862 555 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 VN1R40P-201ENST00000455196 941 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 RN7SL738P-201ENST00000470264 297 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 RPL7AP6-201ENST00000477943 801 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 USP9YP5-201ENST00000511770 630 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC3.1□□□□□ -1.91
FOXA3P55318 SNORA70.14-201ENST00000516205 110 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 SMARCE1P4-201ENST00000523647 241 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 OR4C2P-201ENST00000530855 1064 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 OR8X1P-201ENST00000534542 869 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 AC005000.1-201ENST00000536192 288 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC3.1□□□□□ -1.91
FOXA3P55318 AC090888.3-201ENST00000558917 509 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 AL109741.3-201ENST00000561748 592 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 AL354984.3-201ENST00000604803 325 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 AC010200.2-201ENST00000605098 235 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 AC025175.1-201ENST00000606482 759 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 AP000255.1-201ENST00000610276 676 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 AP002799.1-201ENST00000623552 423 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC3.1□□□□□ -1.91
FOXA3P55318 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC3.1□□□□□ -1.91
FOXA3P55318 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA3P55318 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA3P55318 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA3P55318 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
FOXA3P55318 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA3P55318 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA3P55318 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
FOXA3P55318 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
FOXA3P55318 RNU1-130P-201ENST00000363930 160 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
FOXA3P55318 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
FOXA3P55318 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
FOXA3P55318 AL583835.1-201ENST00000399570 407 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
FOXA3P55318 SNORA11F-201ENST00000408237 128 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 HYKK-202ENST00000408962 847 ntTSL 5 BASIC3.09□□□□□ -1.91
FOXA3P55318 RPL23AP26-201ENST00000412728 464 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 AC098592.2-201ENST00000413158 265 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA3P55318 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
FOXA3P55318 KCTD9P3-201ENST00000434597 1169 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC3.09□□□□□ -1.91
FOXA3P55318 AC004870.2-201ENST00000445615 831 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA3P55318 AC087385.1-201ENST00000475062 312 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 MTND6P6-201ENST00000478031 263 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC3.09□□□□□ -1.91
FOXA3P55318 AC010374.1-201ENST00000503762 1237 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
FOXA3P55318 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC3.09□□□□□ -1.91
FOXA3P55318 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA3P55318 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC3.09□□□□□ -1.91
FOXA3P55318 RNA5SP309-201ENST00000516670 106 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 IGLVIV-64-201ENST00000518581 301 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.09□□□□□ -1.91
FOXA3P55318 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA3P55318 EDDM3DP-201ENST00000554692 434 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA3P55318 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.09□□□□□ -1.91
FOXA3P55318 HYKK-203ENST00000563233 734 ntTSL 2 BASIC3.09□□□□□ -1.91
FOXA3P55318 AC009117.1-201ENST00000563948 554 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 AP001160.4-201ENST00000596971 382 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 AC011445.2-201ENST00000599274 173 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA3P55318 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.09□□□□□ -1.91
FOXA3P55318 AC096586.2-201ENST00000610260 441 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 AC087385.3-201ENST00000620477 187 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 AC008013.2-202ENST00000637965 364 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 OR8A1-204ENST00000642111 1145 ntBASIC3.09□□□□□ -1.91
FOXA3P55318 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
FOXA3P55318 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.92
FOXA3P55318 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC3.09□□□□□ -1.92
FOXA3P55318 MTND4P10-201ENST00000446199 1363 ntBASIC3.09□□□□□ -1.92
FOXA3P55318 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
FOXA3P55318 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
FOXA3P55318 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
FOXA3P55318 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.09□□□□□ -1.92
FOXA3P55318 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.09□□□□□ -1.92
FOXA3P55318 AC066616.2-201ENST00000559334 1481 ntBASIC3.09□□□□□ -1.92
FOXA3P55318 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.09□□□□□ -1.92
FOXA3P55318 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
FOXA3P55318 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
FOXA3P55318 AC090229.1-201ENST00000590983 1609 ntBASIC3.08□□□□□ -1.92
FOXA3P55318 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.08□□□□□ -1.92
FOXA3P55318 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
FOXA3P55318 OR10AB1P-202ENST00000641219 1686 ntBASIC3.08□□□□□ -1.92
FOXA3P55318 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.08□□□□□ -1.92
FOXA3P55318 UBE3AP2-201ENST00000429033 2259 ntBASIC3.08□□□□□ -1.92
FOXA3P55318 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.08□□□□□ -1.92
FOXA3P55318 RNU1-18P-201ENST00000363062 164 ntBASIC3.08□□□□□ -1.92
FOXA3P55318 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
FOXA3P55318 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
FOXA3P55318 PGBD4P8-201ENST00000412993 562 ntBASIC3.08□□□□□ -1.92
FOXA3P55318 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC3.08□□□□□ -1.92
FOXA3P55318 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms