Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC006504.3-201ENST00000586818 523 ntBASIC6.32□□□□□ -1.4
LIG3P49916 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC6.32□□□□□ -1.4
LIG3P49916 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC6.32□□□□□ -1.4
LIG3P49916 AC233280.2-201ENST00000603917 1070 ntBASIC6.32□□□□□ -1.4
LIG3P49916 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC6.32□□□□□ -1.4
LIG3P49916 AC008250.2-201ENST00000615261 205 ntBASIC6.32□□□□□ -1.4
LIG3P49916 AL158209.2-201ENST00000619266 216 ntBASIC6.32□□□□□ -1.4
LIG3P49916 TEX41-254ENST00000626394 423 ntTSL 5 BASIC6.32□□□□□ -1.4
LIG3P49916 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC6.32□□□□□ -1.4
LIG3P49916 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIG3P49916 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIG3P49916 AP002001.2-201ENST00000529025 1469 ntBASIC6.32□□□□□ -1.4
LIG3P49916 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC6.32□□□□□ -1.4
LIG3P49916 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIG3P49916 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
LIG3P49916 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC6.32□□□□□ -1.4
LIG3P49916 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIG3P49916 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIG3P49916 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC6.32□□□□□ -1.4
LIG3P49916 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIG3P49916 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.31□□□□□ -1.4
LIG3P49916 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG3P49916 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG3P49916 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC6.31□□□□□ -1.4
LIG3P49916 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG3P49916 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG3P49916 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIG3P49916 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
LIG3P49916 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG3P49916 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
LIG3P49916 AFP-201ENST00000226359 1914 ntTSL 5 BASIC6.31□□□□□ -1.4
LIG3P49916 Y_RNA.9-201ENST00000362354 101 ntBASIC6.31□□□□□ -1.4
LIG3P49916 U3.10-201ENST00000364459 214 ntBASIC6.31□□□□□ -1.4
LIG3P49916 MIR621-201ENST00000384919 96 ntBASIC6.31□□□□□ -1.4
LIG3P49916 U8.14-201ENST00000390843 143 ntBASIC6.31□□□□□ -1.4
LIG3P49916 RN7SKP151-201ENST00000410230 316 ntBASIC6.31□□□□□ -1.4
LIG3P49916 RNA5SP431-201ENST00000410312 120 ntBASIC6.31□□□□□ -1.4
LIG3P49916 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC6.31□□□□□ -1.4
LIG3P49916 AC009480.2-201ENST00000422916 432 ntBASIC6.31□□□□□ -1.4
LIG3P49916 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC6.31□□□□□ -1.4
LIG3P49916 ZYG11AP1-201ENST00000430329 837 ntBASIC6.31□□□□□ -1.4
LIG3P49916 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG3P49916 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC6.31□□□□□ -1.4
LIG3P49916 MTCO3P18-201ENST00000440206 761 ntBASIC6.31□□□□□ -1.4
LIG3P49916 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC6.31□□□□□ -1.4
LIG3P49916 Z99127.3-201ENST00000448158 395 ntBASIC6.31□□□□□ -1.4
LIG3P49916 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC6.31□□□□□ -1.4
LIG3P49916 HMGB1P7-201ENST00000450921 612 ntBASIC6.31□□□□□ -1.4
LIG3P49916 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC6.31□□□□□ -1.4
LIG3P49916 MTND2P24-201ENST00000453434 806 ntBASIC6.31□□□□□ -1.4
LIG3P49916 RPS27AP3-201ENST00000453803 454 ntBASIC6.31□□□□□ -1.4
LIG3P49916 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC6.31□□□□□ -1.4
LIG3P49916 AC146507.1-201ENST00000468335 354 ntBASIC6.31□□□□□ -1.4
LIG3P49916 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC6.31□□□□□ -1.4
LIG3P49916 RN7SL326P-201ENST00000477493 296 ntBASIC6.31□□□□□ -1.4
LIG3P49916 AC013828.1-201ENST00000481845 158 ntBASIC6.31□□□□□ -1.4
LIG3P49916 AP002453.1-201ENST00000492327 668 ntBASIC6.31□□□□□ -1.4
LIG3P49916 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC6.31□□□□□ -1.4
LIG3P49916 FAM92A1P2-202ENST00000504766 877 ntBASIC6.31□□□□□ -1.4
LIG3P49916 AC093824.1-201ENST00000508796 343 ntBASIC6.31□□□□□ -1.4
LIG3P49916 AC109481.1-201ENST00000509173 282 ntBASIC6.31□□□□□ -1.4
LIG3P49916 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC6.31□□□□□ -1.4
LIG3P49916 AC036111.2-201ENST00000533247 901 ntBASIC6.31□□□□□ -1.4
LIG3P49916 ADI1P3-201ENST00000549509 470 ntBASIC6.31□□□□□ -1.4
LIG3P49916 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC6.31□□□□□ -1.4
LIG3P49916 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC6.31□□□□□ -1.4
LIG3P49916 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC6.31□□□□□ -1.4
LIG3P49916 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIG3P49916 AL845552.1-201ENST00000556820 323 ntBASIC6.31□□□□□ -1.4
LIG3P49916 WDR61-205ENST00000558459 884 ntTSL 3 BASIC6.31□□□□□ -1.4
LIG3P49916 AC026826.3-201ENST00000561747 158 ntBASIC6.31□□□□□ -1.4
LIG3P49916 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC6.31□□□□□ -1.4
LIG3P49916 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC6.31□□□□□ -1.4
LIG3P49916 AC137800.2-201ENST00000574375 120 ntBASIC6.31□□□□□ -1.4
LIG3P49916 AC090236.2-201ENST00000587933 1101 ntBASIC6.31□□□□□ -1.4
LIG3P49916 AC103710.4-201ENST00000609301 899 ntBASIC6.31□□□□□ -1.4
LIG3P49916 AC104985.2-201ENST00000620598 500 ntBASIC6.31□□□□□ -1.4
LIG3P49916 AP001052.1-201ENST00000626421 99 ntBASIC6.31□□□□□ -1.4
LIG3P49916 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC6.31□□□□□ -1.4
LIG3P49916 AC073488.6-201ENST00000632293 754 ntBASIC6.31□□□□□ -1.4
LIG3P49916 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG3P49916 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIG3P49916 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
LIG3P49916 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG3P49916 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIG3P49916 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIG3P49916 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG3P49916 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG3P49916 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC6.31□□□□□ -1.4
LIG3P49916 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC6.31□□□□□ -1.4
LIG3P49916 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC6.3□□□□□ -1.4
LIG3P49916 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
LIG3P49916 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC6.3□□□□□ -1.4
LIG3P49916 AC092692.1-201ENST00000623625 2595 ntBASIC6.3□□□□□ -1.4
LIG3P49916 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.3□□□□□ -1.4
LIG3P49916 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
LIG3P49916 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
LIG3P49916 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
LIG3P49916 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.3□□□□□ -1.4
LIG3P49916 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms