Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
CUX1P39880 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC6.62□□□□□ -1.35
CUX1P39880 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC6.62□□□□□ -1.35
CUX1P39880 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
CUX1P39880 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CUX1P39880 SNORD35B-201ENST00000363660 87 ntBASIC6.62□□□□□ -1.35
CUX1P39880 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC6.62□□□□□ -1.35
CUX1P39880 RNVU1-14-201ENST00000384770 164 ntBASIC6.62□□□□□ -1.35
CUX1P39880 PEX12P1-201ENST00000400284 1048 ntBASIC6.62□□□□□ -1.35
CUX1P39880 MIR1271-201ENST00000408537 86 ntBASIC6.62□□□□□ -1.35
CUX1P39880 DEFB109F-201ENST00000491870 277 ntBASIC6.62□□□□□ -1.35
CUX1P39880 AC005726.1-201ENST00000494679 427 ntBASIC6.62□□□□□ -1.35
CUX1P39880 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC6.62□□□□□ -1.35
CUX1P39880 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC6.62□□□□□ -1.35
CUX1P39880 AC093014.1-201ENST00000548926 724 ntBASIC6.62□□□□□ -1.35
CUX1P39880 AC079171.1-201ENST00000568788 914 ntBASIC6.62□□□□□ -1.35
CUX1P39880 MIR5187-201ENST00000583479 76 ntBASIC6.62□□□□□ -1.35
CUX1P39880 MIR3651-201ENST00000630427 90 ntBASIC6.62□□□□□ -1.35
CUX1P39880 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC6.62□□□□□ -1.35
CUX1P39880 AC005831.1-201ENST00000624384 1697 ntBASIC6.62□□□□□ -1.35
CUX1P39880 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC6.62□□□□□ -1.35
CUX1P39880 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
CUX1P39880 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
CUX1P39880 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC6.62□□□□□ -1.35
CUX1P39880 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
CUX1P39880 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
CUX1P39880 RNA5SP97-201ENST00000365006 84 ntBASIC6.61□□□□□ -1.35
CUX1P39880 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CUX1P39880 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC6.61□□□□□ -1.35
CUX1P39880 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC6.61□□□□□ -1.35
CUX1P39880 PDSS1P1-201ENST00000422953 1114 ntBASIC6.61□□□□□ -1.35
CUX1P39880 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC6.61□□□□□ -1.35
CUX1P39880 WBP1LP4-201ENST00000505043 344 ntBASIC6.61□□□□□ -1.35
CUX1P39880 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC6.61□□□□□ -1.35
CUX1P39880 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC6.61□□□□□ -1.35
CUX1P39880 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC6.61□□□□□ -1.35
CUX1P39880 OR2BH1P-201ENST00000608850 864 ntBASIC6.61□□□□□ -1.35
CUX1P39880 MKKS-203ENST00000609375 882 ntTSL 2 BASIC6.61□□□□□ -1.35
CUX1P39880 AC097505.1-201ENST00000610199 565 ntBASIC6.61□□□□□ -1.35
CUX1P39880 AC018816.2-201ENST00000621460 353 ntBASIC6.61□□□□□ -1.35
CUX1P39880 MIR7702-201ENST00000621931 59 ntBASIC6.61□□□□□ -1.35
CUX1P39880 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CUX1P39880 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
CUX1P39880 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CUX1P39880 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CUX1P39880 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC6.61□□□□□ -1.35
CUX1P39880 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CUX1P39880 ESD-201ENST00000378697 1079 ntTSL 5 BASIC6.6□□□□□ -1.35
CUX1P39880 ATP5A1P2-201ENST00000412323 255 ntBASIC6.6□□□□□ -1.35
CUX1P39880 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC6.6□□□□□ -1.35
CUX1P39880 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
CUX1P39880 AL358832.1-201ENST00000497800 389 ntBASIC6.6□□□□□ -1.35
CUX1P39880 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC6.6□□□□□ -1.35
CUX1P39880 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC6.6□□□□□ -1.35
CUX1P39880 ZNF415P1-201ENST00000582279 1166 ntBASIC6.6□□□□□ -1.35
CUX1P39880 AC002069.2-201ENST00000603580 883 ntBASIC6.6□□□□□ -1.35
CUX1P39880 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC6.6□□□□□ -1.35
CUX1P39880 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC6.6□□□□□ -1.35
CUX1P39880 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
CUX1P39880 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
CUX1P39880 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC6.6□□□□□ -1.35
CUX1P39880 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
CUX1P39880 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CUX1P39880 RNA5SP72-201ENST00000364442 117 ntBASIC6.6□□□□□ -1.35
CUX1P39880 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC6.6□□□□□ -1.35
CUX1P39880 AL359643.1-201ENST00000404109 423 ntBASIC6.6□□□□□ -1.35
CUX1P39880 NDUFB4P4-201ENST00000404822 243 ntBASIC6.6□□□□□ -1.35
CUX1P39880 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC6.6□□□□□ -1.35
CUX1P39880 UBE2Q2P12-201ENST00000414573 204 ntBASIC6.6□□□□□ -1.35
CUX1P39880 RPS29P4-201ENST00000414733 161 ntBASIC6.6□□□□□ -1.35
CUX1P39880 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC6.6□□□□□ -1.35
CUX1P39880 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC6.6□□□□□ -1.35
CUX1P39880 RPL23AP89-201ENST00000439324 255 ntBASIC6.6□□□□□ -1.35
CUX1P39880 AC104978.1-201ENST00000449387 391 ntBASIC6.6□□□□□ -1.35
CUX1P39880 UBDP1-202ENST00000457888 382 ntBASIC6.6□□□□□ -1.35
CUX1P39880 USP9YP2-201ENST00000504503 1000 ntBASIC6.6□□□□□ -1.35
CUX1P39880 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC6.6□□□□□ -1.35
CUX1P39880 USP9YP1-201ENST00000513521 1002 ntBASIC6.6□□□□□ -1.35
CUX1P39880 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC6.6□□□□□ -1.35
CUX1P39880 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC6.6□□□□□ -1.35
CUX1P39880 AC083837.1-201ENST00000565297 2994 ntBASIC6.6□□□□□ -1.35
CUX1P39880 AC009852.2-201ENST00000567898 485 ntBASIC6.6□□□□□ -1.35
CUX1P39880 AC012417.1-201ENST00000582307 1039 ntBASIC6.6□□□□□ -1.35
CUX1P39880 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC6.6□□□□□ -1.35
CUX1P39880 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC6.6□□□□□ -1.35
CUX1P39880 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC6.6□□□□□ -1.35
CUX1P39880 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC6.6□□□□□ -1.35
CUX1P39880 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.35
CUX1P39880 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
CUX1P39880 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
CUX1P39880 AC067945.1-201ENST00000342609 618 ntBASIC6.59□□□□□ -1.35
CUX1P39880 MIR490-201ENST00000384865 128 ntBASIC6.59□□□□□ -1.35
CUX1P39880 AC004448.2-201ENST00000422360 586 ntBASIC6.59□□□□□ -1.35
CUX1P39880 HSPD1P21-201ENST00000436541 245 ntBASIC6.59□□□□□ -1.35
CUX1P39880 SETP14-201ENST00000497538 873 ntBASIC6.59□□□□□ -1.35
CUX1P39880 HSPD1P15-201ENST00000505573 1122 ntBASIC6.59□□□□□ -1.35
CUX1P39880 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC6.59□□□□□ -1.35
CUX1P39880 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC6.59□□□□□ -1.35
CUX1P39880 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC6.59□□□□□ -1.35
CUX1P39880 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms