Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 TPMTP4-201ENST00000450749 678 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC6.02□□□□□ -1.45
COL6A1P12109 Z92846.1-201ENST00000456203 268 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC6.02□□□□□ -1.45
COL6A1P12109 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC6.02□□□□□ -1.45
COL6A1P12109 RPL30P6-201ENST00000475925 342 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 RPL21P6-201ENST00000479171 504 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 AC090058.1-201ENST00000498788 435 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A1P12109 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC6.02□□□□□ -1.45
COL6A1P12109 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC6.02□□□□□ -1.45
COL6A1P12109 RNU6-1178P-201ENST00000516674 107 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC6.02□□□□□ -1.45
COL6A1P12109 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC6.02□□□□□ -1.45
COL6A1P12109 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.02□□□□□ -1.45
COL6A1P12109 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A1P12109 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC6.02□□□□□ -1.45
COL6A1P12109 EDDM3DP-201ENST00000554692 434 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC6.02□□□□□ -1.45
COL6A1P12109 AADACP1-206ENST00000561502 1193 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 CASC16-202ENST00000563844 610 ntTSL 3 BASIC6.02□□□□□ -1.45
COL6A1P12109 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC6.02□□□□□ -1.45
COL6A1P12109 EIF4A2P1-201ENST00000587313 1063 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 AC011487.3-201ENST00000593607 453 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 VN1R90P-201ENST00000595717 726 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC6.02□□□□□ -1.45
COL6A1P12109 AC123786.2-201ENST00000603459 275 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 AC073648.5-201ENST00000603502 305 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 AL513477.2-201ENST00000607858 568 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 AC068944.2-201ENST00000610373 403 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 AC083809.1-201ENST00000615051 472 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC6.02□□□□□ -1.45
COL6A1P12109 uc_338.9-201ENST00000617424 182 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC6.02□□□□□ -1.45
COL6A1P12109 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC6.02□□□□□ -1.45
COL6A1P12109 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC6.02□□□□□ -1.45
COL6A1P12109 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A1P12109 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A1P12109 AC107027.3-201ENST00000565095 3473 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A1P12109 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A1P12109 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC6.02□□□□□ -1.45
COL6A1P12109 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC6.02□□□□□ -1.45
COL6A1P12109 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
COL6A1P12109 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A1P12109 AC009229.4-201ENST00000623854 1947 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC6.01□□□□□ -1.45
COL6A1P12109 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC6.01□□□□□ -1.45
COL6A1P12109 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
COL6A1P12109 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A1P12109 CDC123-202ENST00000378900 933 ntTSL 5 BASIC6.01□□□□□ -1.45
COL6A1P12109 RNU4-74P-201ENST00000411280 161 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 AL133482.1-201ENST00000415988 498 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 AC012519.1-201ENST00000424588 610 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC6.01□□□□□ -1.45
COL6A1P12109 MTCO3P21-201ENST00000430791 643 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 RPL12P18-201ENST00000437175 325 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 AL353572.1-201ENST00000442490 417 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 AL050341.1-201ENST00000447743 313 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC6.01□□□□□ -1.45
COL6A1P12109 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC6.01□□□□□ -1.45
COL6A1P12109 snoU13.20-201ENST00000459180 104 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A1P12109 ATP5LP5-201ENST00000483050 299 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 AC069304.1-201ENST00000491593 704 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A1P12109 DSTNP2-201ENST00000504533 515 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A1P12109 EIF3KP3-201ENST00000514461 639 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 IGHVII-44-2-201ENST00000517728 250 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 AP001804.1-201ENST00000526868 919 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 PMS2P3-207ENST00000529061 717 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
COL6A1P12109 AKIRIN1P1-201ENST00000547384 544 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC6.01□□□□□ -1.45
COL6A1P12109 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC6.01□□□□□ -1.45
COL6A1P12109 NPM1P47-201ENST00000560843 856 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC6.01□□□□□ -1.45
COL6A1P12109 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC6.01□□□□□ -1.45
COL6A1P12109 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC6.01□□□□□ -1.45
COL6A1P12109 VN1R82P-201ENST00000601481 356 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 AC090525.3-201ENST00000605601 189 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 AL161616.1-201ENST00000611867 286 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 EIF3FP1-201ENST00000613970 806 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 AC073968.1-201ENST00000618594 637 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC6.01□□□□□ -1.45
COL6A1P12109 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A1P12109 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A1P12109 AL359757.1-201ENST00000623176 255 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 RBM12B-AS1-201ENST00000623283 653 ntBASIC6.01□□□□□ -1.45
COL6A1P12109 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A1P12109 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
COL6A1P12109 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A1P12109 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC6.01□□□□□ -1.45
COL6A1P12109 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC6.01□□□□□ -1.45
COL6A1P12109 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A1P12109 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC6.01□□□□□ -1.45
COL6A1P12109 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC6.01□□□□□ -1.45
COL6A1P12109 UQCRC2P1-201ENST00000417777 1332 ntBASIC6□□□□□ -1.45
COL6A1P12109 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms