Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC8.38□□□□□ -1.07
SHROOM4Q9ULL8 AL359219.2-201ENST00000555184 348 ntBASIC8.38□□□□□ -1.07
SHROOM4Q9ULL8 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC8.38□□□□□ -1.07
SHROOM4Q9ULL8 AC091953.5-201ENST00000622919 233 ntBASIC8.38□□□□□ -1.07
SHROOM4Q9ULL8 AL356490.1-201ENST00000623079 479 ntBASIC8.38□□□□□ -1.07
SHROOM4Q9ULL8 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC8.38□□□□□ -1.07
SHROOM4Q9ULL8 AL121839.2-201ENST00000565058 6943 ntBASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 ARHGAP42P3-201ENST00000443989 2508 ntBASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 AC139769.1-204ENST00000472297 1931 ntBASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 AL592291.1-201ENST00000403830 352 ntBASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 RPL26P37-201ENST00000411983 438 ntBASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 HSPE1P22-201ENST00000456856 327 ntBASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 IGHV3-63-201ENST00000518422 341 ntBASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 HMGB1P46-201ENST00000520062 610 ntBASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 OR8K2P-201ENST00000524645 927 ntBASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 LINC00557-201ENST00000563184 1279 ntBASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 ZNF402P-201ENST00000404435 3100 ntBASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 AC104623.2-202ENST00000623477 4002 ntBASIC8.37□□□□□ -1.07
SHROOM4Q9ULL8 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC8.36□□□□□ -1.07
SHROOM4Q9ULL8 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC8.36□□□□□ -1.07
SHROOM4Q9ULL8 AL158163.1-201ENST00000603915 1649 ntBASIC8.36□□□□□ -1.07
SHROOM4Q9ULL8 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
SHROOM4Q9ULL8 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC8.36□□□□□ -1.07
SHROOM4Q9ULL8 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC8.36□□□□□ -1.07
SHROOM4Q9ULL8 AL590806.1-201ENST00000415818 853 ntBASIC8.36□□□□□ -1.07
SHROOM4Q9ULL8 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC8.36□□□□□ -1.07
SHROOM4Q9ULL8 RPL7P15-201ENST00000461190 712 ntBASIC8.36□□□□□ -1.07
SHROOM4Q9ULL8 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
SHROOM4Q9ULL8 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC8.36□□□□□ -1.07
SHROOM4Q9ULL8 HYKK-203ENST00000563233 734 ntTSL 2 BASIC8.36□□□□□ -1.07
SHROOM4Q9ULL8 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC8.36□□□□□ -1.07
SHROOM4Q9ULL8 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC8.36□□□□□ -1.07
SHROOM4Q9ULL8 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
SHROOM4Q9ULL8 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
SHROOM4Q9ULL8 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 NAP1L4P1-201ENST00000319092 1157 ntBASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 AL691517.1-201ENST00000440833 1235 ntBASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 snoU13.24-201ENST00000458998 104 ntBASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 SUMO1P1-201ENST00000497904 306 ntBASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 AL592156.1-201ENST00000508758 304 ntBASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 BTG4P1-201ENST00000510421 183 ntBASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 RN7SL435P-201ENST00000584418 282 ntBASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 ADAD1P2-201ENST00000588476 646 ntBASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 AL161729.3-201ENST00000603533 673 ntBASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 AC034236.3-201ENST00000605999 461 ntBASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 ARHGAP42P1-201ENST00000507474 1976 ntBASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
SHROOM4Q9ULL8 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 MFSD13B-201ENST00000420133 1290 ntBASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 YME1L1P1-201ENST00000429435 297 ntBASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 RPEP2-201ENST00000432149 701 ntBASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 AC021205.1-201ENST00000468797 348 ntBASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 AC128716.1-201ENST00000475129 166 ntBASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 AC005242.1-201ENST00000585658 438 ntBASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 AC015849.2-201ENST00000605738 409 ntBASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 FAM27D1-201ENST00000612308 341 ntBASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 AL445363.3-201ENST00000623080 671 ntBASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 AL606537.1-201ENST00000607258 2011 ntBASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC8.34□□□□□ -1.07
SHROOM4Q9ULL8 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms