Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.03□□□□□ -1.6
USP41Q3LFD5 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC5.03□□□□□ -1.6
USP41Q3LFD5 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
USP41Q3LFD5 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.03□□□□□ -1.6
USP41Q3LFD5 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.03□□□□□ -1.6
USP41Q3LFD5 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
USP41Q3LFD5 ZNF137P-201ENST00000456718 1920 ntBASIC5.03□□□□□ -1.6
USP41Q3LFD5 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC5.03□□□□□ -1.6
USP41Q3LFD5 HSPD1P11-201ENST00000508643 1702 ntBASIC5.03□□□□□ -1.6
USP41Q3LFD5 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.03□□□□□ -1.6
USP41Q3LFD5 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
USP41Q3LFD5 AC108751.5-201ENST00000492880 1336 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 MFSD8-213ENST00000641134 1327 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
USP41Q3LFD5 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
USP41Q3LFD5 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
USP41Q3LFD5 RNA5SP447-201ENST00000363749 119 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 SNORA71.2-201ENST00000364941 134 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 SNORA72.3-201ENST00000365074 132 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 AC068538.1-201ENST00000376856 336 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 RNU6-468P-201ENST00000384003 109 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 RNU4-31P-201ENST00000384211 141 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 Z98745.1-201ENST00000402553 494 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 OR51A6P-201ENST00000418680 1004 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 MTCO3P4-201ENST00000419236 787 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 RPEP3-201ENST00000425462 676 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 TRBV26OR9-2-201ENST00000432077 293 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 TVP23BP2-201ENST00000455082 615 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 RPS17P11-201ENST00000474297 293 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 AC018442.3-201ENST00000523025 183 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
USP41Q3LFD5 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 AC023825.1-201ENST00000566704 1030 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 AC136624.4-201ENST00000573044 370 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 SS18L2P2-201ENST00000583960 235 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 AC008507.2-201ENST00000588402 1176 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 RNF138P2-201ENST00000603490 592 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 AL133338.2-201ENST00000604292 736 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 AC018618.2-201ENST00000604770 446 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 AL445423.1-201ENST00000609941 536 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 AC100847.1-201ENST00000611316 481 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 AC090772.4-201ENST00000623599 362 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 AL049536.1-201ENST00000625043 744 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 AC099654.9-201ENST00000637055 678 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 AL596275.2-204ENST00000641628 552 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 AL596275.2-206ENST00000641957 626 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
USP41Q3LFD5 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC5.02□□□□□ -1.61
USP41Q3LFD5 MAPK10-349ENST00000641767 3661 ntBASIC5.02□□□□□ -1.61
USP41Q3LFD5 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
USP41Q3LFD5 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
USP41Q3LFD5 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
USP41Q3LFD5 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.01□□□□□ -1.61
USP41Q3LFD5 AP000542.2-201ENST00000623199 6179 ntBASIC5.01□□□□□ -1.61
USP41Q3LFD5 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
USP41Q3LFD5 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
USP41Q3LFD5 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
USP41Q3LFD5 SNORD56.4-201ENST00000363883 71 ntBASIC5.01□□□□□ -1.61
USP41Q3LFD5 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC5.01□□□□□ -1.61
USP41Q3LFD5 RNU6-452P-201ENST00000384406 107 ntBASIC5.01□□□□□ -1.61
USP41Q3LFD5 HMGB3P19-201ENST00000403971 560 ntBASIC5.01□□□□□ -1.61
USP41Q3LFD5 AC105402.1-201ENST00000413336 545 ntBASIC5.01□□□□□ -1.61
USP41Q3LFD5 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC5.01□□□□□ -1.61
USP41Q3LFD5 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC5.01□□□□□ -1.61
USP41Q3LFD5 AC023128.2-201ENST00000420880 1223 ntBASIC5.01□□□□□ -1.61
USP41Q3LFD5 DEFB130D-201ENST00000426866 237 ntBASIC5.01□□□□□ -1.61
USP41Q3LFD5 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC5.01□□□□□ -1.61
USP41Q3LFD5 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC5.01□□□□□ -1.61
USP41Q3LFD5 AC073143.1-201ENST00000436316 395 ntBASIC5.01□□□□□ -1.61
USP41Q3LFD5 YWHAZP2-201ENST00000440317 728 ntBASIC5.01□□□□□ -1.61
USP41Q3LFD5 RPL7P33-201ENST00000444159 742 ntBASIC5.01□□□□□ -1.61
USP41Q3LFD5 AC097499.1-201ENST00000444277 208 ntBASIC5.01□□□□□ -1.61
USP41Q3LFD5 RPL34P26-201ENST00000445636 354 ntBASIC5.01□□□□□ -1.61
USP41Q3LFD5 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC5.01□□□□□ -1.61
USP41Q3LFD5 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC5.01□□□□□ -1.61
USP41Q3LFD5 AL133244.1-201ENST00000456007 258 ntBASIC5.01□□□□□ -1.61
USP41Q3LFD5 RPL21P18-201ENST00000469899 480 ntBASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms