Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC3.75□□□□□ -1.81
CHD3Q12873 CARD16-203ENST00000525374 503 ntTSL 3 BASIC3.75□□□□□ -1.81
CHD3Q12873 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC3.75□□□□□ -1.81
CHD3Q12873 AC025884.1-201ENST00000556034 378 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.75□□□□□ -1.81
CHD3Q12873 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC3.75□□□□□ -1.81
CHD3Q12873 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC3.75□□□□□ -1.81
CHD3Q12873 AL137072.1-201ENST00000603444 466 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 AC024220.1-201ENST00000603675 484 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 AL160281.1-201ENST00000605307 311 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC3.75□□□□□ -1.81
CHD3Q12873 TEX41-256ENST00000626411 368 ntTSL 5 BASIC3.75□□□□□ -1.81
CHD3Q12873 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CHD3Q12873 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CHD3Q12873 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CHD3Q12873 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC3.75□□□□□ -1.81
CHD3Q12873 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CHD3Q12873 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CHD3Q12873 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CHD3Q12873 RNA5SP283-201ENST00000365604 119 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 AMZ2P2-201ENST00000406819 1057 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 SEPT7P8-201ENST00000413308 775 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CHD3Q12873 RPS12P5-201ENST00000423449 371 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 DYNLL1P7-201ENST00000429273 258 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC3.75□□□□□ -1.81
CHD3Q12873 PRELID3BP10-201ENST00000431957 584 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC3.75□□□□□ -1.81
CHD3Q12873 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.75□□□□□ -1.81
CHD3Q12873 ABCF2P2-201ENST00000450549 296 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 EIF4A2P2-201ENST00000455776 1070 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 AC090013.1-201ENST00000485147 480 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 AC041039.1-201ENST00000485656 536 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC3.75□□□□□ -1.81
CHD3Q12873 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC3.75□□□□□ -1.81
CHD3Q12873 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC3.75□□□□□ -1.81
CHD3Q12873 RNA5SP497-201ENST00000516081 97 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC3.75□□□□□ -1.81
CHD3Q12873 OR8R1P-201ENST00000543943 764 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 MIR4298-201ENST00000584380 73 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC3.75□□□□□ -1.81
CHD3Q12873 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC3.75□□□□□ -1.81
CHD3Q12873 AC007546.1-201ENST00000619452 559 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.75□□□□□ -1.81
CHD3Q12873 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
CHD3Q12873 LINC01808-202ENST00000641680 1116 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
CHD3Q12873 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
CHD3Q12873 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC3.74□□□□□ -1.81
CHD3Q12873 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
CHD3Q12873 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC3.74□□□□□ -1.81
CHD3Q12873 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
CHD3Q12873 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CHD3Q12873 OR56B2P-201ENST00000317102 954 ntBASIC3.74□□□□□ -1.81
CHD3Q12873 AC067945.1-201ENST00000342609 618 ntBASIC3.74□□□□□ -1.81
CHD3Q12873 Y_RNA.333-201ENST00000365274 102 ntBASIC3.74□□□□□ -1.81
CHD3Q12873 RN7SKP33-201ENST00000410942 340 ntBASIC3.74□□□□□ -1.81
CHD3Q12873 AL139095.3-201ENST00000419672 1203 ntBASIC3.74□□□□□ -1.81
CHD3Q12873 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CHD3Q12873 YWHAEP5-201ENST00000431545 765 ntBASIC3.74□□□□□ -1.81
CHD3Q12873 ARL4AP4-201ENST00000434170 518 ntBASIC3.74□□□□□ -1.81
CHD3Q12873 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.74□□□□□ -1.81
CHD3Q12873 AL133547.1-201ENST00000448546 220 ntBASIC3.74□□□□□ -1.81
CHD3Q12873 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.74□□□□□ -1.81
CHD3Q12873 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CHD3Q12873 AC104164.2-201ENST00000496953 495 ntBASIC3.74□□□□□ -1.81
CHD3Q12873 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC3.74□□□□□ -1.81
CHD3Q12873 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC3.74□□□□□ -1.81
CHD3Q12873 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CHD3Q12873 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.74□□□□□ -1.81
CHD3Q12873 AC079298.2-201ENST00000623885 459 ntBASIC3.74□□□□□ -1.81
CHD3Q12873 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC3.74□□□□□ -1.81
CHD3Q12873 FTO-203ENST00000460382 1517 ntTSL 5 BASIC3.74□□□□□ -1.81
CHD3Q12873 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CHD3Q12873 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC3.74□□□□□ -1.81
CHD3Q12873 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.74□□□□□ -1.81
CHD3Q12873 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CHD3Q12873 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CHD3Q12873 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
CHD3Q12873 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC3.73□□□□□ -1.81
CHD3Q12873 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
CHD3Q12873 RN7SKP235-201ENST00000410662 305 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 RNU6-628P-201ENST00000410675 107 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.73□□□□□ -1.81
CHD3Q12873 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC3.73□□□□□ -1.81
CHD3Q12873 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CHD3Q12873 PPIAP13-201ENST00000434706 478 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 RPL6P5-201ENST00000445678 828 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC3.73□□□□□ -1.81
CHD3Q12873 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.73□□□□□ -1.81
CHD3Q12873 RPL36AP13-201ENST00000457490 317 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 AC138409.2-202ENST00000507274 458 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 SNORA67.7-201ENST00000516664 135 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.73□□□□□ -1.81
CHD3Q12873 AC010547.7-201ENST00000570323 333 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.73□□□□□ -1.81
CHD3Q12873 MIR6075-201ENST00000620782 95 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 AC244100.1-202ENST00000621554 382 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms