Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.32□□□□□ -1.72
SOX3P41225 PNRC2P1-201ENST00000423940 420 ntBASIC4.32□□□□□ -1.72
SOX3P41225 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC4.32□□□□□ -1.72
SOX3P41225 AL035458.1-201ENST00000433096 585 ntBASIC4.32□□□□□ -1.72
SOX3P41225 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.32□□□□□ -1.72
SOX3P41225 CACYBPP1-201ENST00000438592 684 ntBASIC4.32□□□□□ -1.72
SOX3P41225 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SOX3P41225 AC069540.1-201ENST00000446320 988 ntBASIC4.32□□□□□ -1.72
SOX3P41225 ZFRP1-201ENST00000457579 2970 ntBASIC4.32□□□□□ -1.72
SOX3P41225 AC006463.2-201ENST00000473326 348 ntBASIC4.32□□□□□ -1.72
SOX3P41225 RN7SL459P-201ENST00000481078 302 ntBASIC4.32□□□□□ -1.72
SOX3P41225 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.32□□□□□ -1.72
SOX3P41225 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SOX3P41225 PPM1AP1-201ENST00000502740 1135 ntBASIC4.32□□□□□ -1.72
SOX3P41225 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.32□□□□□ -1.72
SOX3P41225 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.32□□□□□ -1.72
SOX3P41225 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.32□□□□□ -1.72
SOX3P41225 SNORA31.13-201ENST00000516624 135 ntBASIC4.32□□□□□ -1.72
SOX3P41225 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.32□□□□□ -1.72
SOX3P41225 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.32□□□□□ -1.72
SOX3P41225 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC4.32□□□□□ -1.72
SOX3P41225 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC4.32□□□□□ -1.72
SOX3P41225 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.32□□□□□ -1.72
SOX3P41225 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.32□□□□□ -1.72
SOX3P41225 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.32□□□□□ -1.72
SOX3P41225 AC068620.3-201ENST00000602749 560 ntBASIC4.32□□□□□ -1.72
SOX3P41225 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.32□□□□□ -1.72
SOX3P41225 AL049844.2-201ENST00000604280 628 ntBASIC4.32□□□□□ -1.72
SOX3P41225 AC097504.2-201ENST00000608088 454 ntBASIC4.32□□□□□ -1.72
SOX3P41225 AC021851.1-201ENST00000608537 1082 ntBASIC4.32□□□□□ -1.72
SOX3P41225 AP004607.9-201ENST00000618202 316 ntBASIC4.32□□□□□ -1.72
SOX3P41225 AC011815.3-201ENST00000624194 473 ntBASIC4.32□□□□□ -1.72
SOX3P41225 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.32□□□□□ -1.72
SOX3P41225 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SOX3P41225 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SOX3P41225 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.32□□□□□ -1.72
SOX3P41225 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
SOX3P41225 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
SOX3P41225 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SOX3P41225 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.32□□□□□ -1.72
SOX3P41225 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SOX3P41225 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.31□□□□□ -1.72
SOX3P41225 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
SOX3P41225 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SOX3P41225 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
SOX3P41225 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SOX3P41225 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
SOX3P41225 MFSD8-213ENST00000641134 1327 ntBASIC4.31□□□□□ -1.72
SOX3P41225 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.31□□□□□ -1.72
SOX3P41225 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SOX3P41225 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SOX3P41225 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SOX3P41225 RNU1-94P-201ENST00000362627 173 ntBASIC4.31□□□□□ -1.72
SOX3P41225 RNA5SP443-201ENST00000363083 132 ntBASIC4.31□□□□□ -1.72
SOX3P41225 SNORA70F-201ENST00000384142 135 ntBASIC4.31□□□□□ -1.72
SOX3P41225 RNU6-1005P-201ENST00000384519 107 ntBASIC4.31□□□□□ -1.72
SOX3P41225 RNU6-925P-201ENST00000384629 104 ntBASIC4.31□□□□□ -1.72
SOX3P41225 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
SOX3P41225 GLULP6-201ENST00000399502 913 ntBASIC4.31□□□□□ -1.72
SOX3P41225 RPS27AP11-201ENST00000402798 447 ntBASIC4.31□□□□□ -1.72
SOX3P41225 RPL21P108-201ENST00000413857 481 ntBASIC4.31□□□□□ -1.72
SOX3P41225 CYCSP10-201ENST00000417973 294 ntBASIC4.31□□□□□ -1.72
SOX3P41225 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.31□□□□□ -1.72
SOX3P41225 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC4.31□□□□□ -1.72
SOX3P41225 HSFY1P1-201ENST00000423928 1178 ntBASIC4.31□□□□□ -1.72
SOX3P41225 SEC63P1-201ENST00000425785 1258 ntBASIC4.31□□□□□ -1.72
SOX3P41225 AC013262.1-201ENST00000426710 252 ntBASIC4.31□□□□□ -1.72
SOX3P41225 MTCO1P43-201ENST00000431831 488 ntBASIC4.31□□□□□ -1.72
SOX3P41225 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.31□□□□□ -1.72
SOX3P41225 AC006994.1-201ENST00000438212 839 ntBASIC4.31□□□□□ -1.72
SOX3P41225 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.31□□□□□ -1.72
SOX3P41225 H2AFZP6-201ENST00000444403 394 ntBASIC4.31□□□□□ -1.72
SOX3P41225 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC4.31□□□□□ -1.72
SOX3P41225 RPL6P5-201ENST00000445678 828 ntBASIC4.31□□□□□ -1.72
SOX3P41225 CYCSP42-201ENST00000450823 238 ntBASIC4.31□□□□□ -1.72
SOX3P41225 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC4.31□□□□□ -1.72
SOX3P41225 RPS20P4-201ENST00000461659 355 ntBASIC4.31□□□□□ -1.72
SOX3P41225 AC096741.1-201ENST00000472250 846 ntBASIC4.31□□□□□ -1.72
SOX3P41225 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC4.31□□□□□ -1.72
SOX3P41225 AC093801.2-201ENST00000503966 1050 ntBASIC4.31□□□□□ -1.72
SOX3P41225 RNU6-1004P-201ENST00000516584 111 ntBASIC4.31□□□□□ -1.72
SOX3P41225 MAL2-205ENST00000521048 575 ntTSL 4 BASIC4.31□□□□□ -1.72
SOX3P41225 AC008745.1-201ENST00000604064 271 ntBASIC4.31□□□□□ -1.72
SOX3P41225 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
SOX3P41225 AC006840.1-201ENST00000623069 542 ntBASIC4.31□□□□□ -1.72
SOX3P41225 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.31□□□□□ -1.72
SOX3P41225 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
SOX3P41225 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.31□□□□□ -1.72
SOX3P41225 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
SOX3P41225 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
SOX3P41225 CASC19-261ENST00000641853 1638 ntBASIC4.31□□□□□ -1.72
SOX3P41225 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
SOX3P41225 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SOX3P41225 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SOX3P41225 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
SOX3P41225 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
SOX3P41225 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
SOX3P41225 EOGT-210ENST00000615922 1931 ntBASIC4.31□□□□□ -1.72
SOX3P41225 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.3□□□□□ -1.72
SOX3P41225 MAPK10-320ENST00000641462 6696 ntBASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 126.2 ms