Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC112206.1-201ENST00000468416 477 ntBASIC6.67□□□□□ -1.34
CUX1P39880 RPL23AP65-201ENST00000475608 468 ntBASIC6.67□□□□□ -1.34
CUX1P39880 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC6.67□□□□□ -1.34
CUX1P39880 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC6.67□□□□□ -1.34
CUX1P39880 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC6.67□□□□□ -1.34
CUX1P39880 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CUX1P39880 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC6.67□□□□□ -1.34
CUX1P39880 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC6.67□□□□□ -1.34
CUX1P39880 AL160281.1-201ENST00000605307 311 ntBASIC6.67□□□□□ -1.34
CUX1P39880 RNU1-30P-201ENST00000606575 163 ntBASIC6.67□□□□□ -1.34
CUX1P39880 AL391497.1-201ENST00000608671 547 ntBASIC6.67□□□□□ -1.34
CUX1P39880 AL159169.3-201ENST00000608871 561 ntBASIC6.67□□□□□ -1.34
CUX1P39880 MIR7975-201ENST00000619350 68 ntBASIC6.67□□□□□ -1.34
CUX1P39880 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CUX1P39880 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC6.67□□□□□ -1.34
CUX1P39880 AP004289.2-201ENST00000444413 1457 ntBASIC6.67□□□□□ -1.34
CUX1P39880 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
CUX1P39880 AC032011.1-201ENST00000611703 1549 ntBASIC6.67□□□□□ -1.34
CUX1P39880 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CUX1P39880 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC6.66□□□□□ -1.34
CUX1P39880 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC6.66□□□□□ -1.34
CUX1P39880 AC074250.1-201ENST00000511117 192 ntBASIC6.66□□□□□ -1.34
CUX1P39880 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC6.66□□□□□ -1.34
CUX1P39880 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC6.66□□□□□ -1.34
CUX1P39880 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC6.66□□□□□ -1.34
CUX1P39880 AF131215.7-201ENST00000602443 707 ntBASIC6.66□□□□□ -1.34
CUX1P39880 U3.45-201ENST00000607547 219 ntBASIC6.66□□□□□ -1.34
CUX1P39880 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC6.66□□□□□ -1.34
CUX1P39880 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
CUX1P39880 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC6.66□□□□□ -1.34
CUX1P39880 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
CUX1P39880 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
CUX1P39880 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC6.66□□□□□ -1.34
CUX1P39880 AC074029.4-201ENST00000624796 1859 ntBASIC6.66□□□□□ -1.34
CUX1P39880 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
CUX1P39880 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC6.66□□□□□ -1.34
CUX1P39880 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
CUX1P39880 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
CUX1P39880 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
CUX1P39880 MIR34B-201ENST00000385076 84 ntBASIC6.66□□□□□ -1.34
CUX1P39880 SOD2P1-201ENST00000396543 562 ntBASIC6.66□□□□□ -1.34
CUX1P39880 PGBD4P8-201ENST00000412993 562 ntBASIC6.66□□□□□ -1.34
CUX1P39880 AL591419.1-201ENST00000427423 339 ntBASIC6.66□□□□□ -1.34
CUX1P39880 SKP1P3-201ENST00000429280 487 ntBASIC6.66□□□□□ -1.34
CUX1P39880 FABP3P2-201ENST00000453169 399 ntBASIC6.66□□□□□ -1.34
CUX1P39880 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
CUX1P39880 SNORA59A-201ENST00000459326 152 ntBASIC6.66□□□□□ -1.34
CUX1P39880 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC6.66□□□□□ -1.34
CUX1P39880 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC6.66□□□□□ -1.34
CUX1P39880 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC6.66□□□□□ -1.34
CUX1P39880 MIR4472-2-201ENST00000582069 67 ntBASIC6.66□□□□□ -1.34
CUX1P39880 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC6.66□□□□□ -1.34
CUX1P39880 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC6.66□□□□□ -1.34
CUX1P39880 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC6.66□□□□□ -1.34
CUX1P39880 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
CUX1P39880 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
CUX1P39880 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
CUX1P39880 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC6.65□□□□□ -1.34
CUX1P39880 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
CUX1P39880 RNA5SP51-201ENST00000364750 119 ntBASIC6.65□□□□□ -1.35
CUX1P39880 RN7SL293P-201ENST00000481765 281 ntBASIC6.65□□□□□ -1.35
CUX1P39880 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC6.65□□□□□ -1.35
CUX1P39880 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC6.65□□□□□ -1.35
CUX1P39880 DUX4L52-201ENST00000549363 777 ntBASIC6.65□□□□□ -1.35
CUX1P39880 VN1R92P-201ENST00000598511 928 ntBASIC6.65□□□□□ -1.35
CUX1P39880 AL138721.1-201ENST00000616756 179 ntBASIC6.65□□□□□ -1.35
CUX1P39880 AC138907.10-201ENST00000623708 983 ntBASIC6.65□□□□□ -1.35
CUX1P39880 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC6.64□□□□□ -1.35
CUX1P39880 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CUX1P39880 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
CUX1P39880 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC6.64□□□□□ -1.35
CUX1P39880 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC6.64□□□□□ -1.35
CUX1P39880 A2MP1-204ENST00000566278 4130 ntBASIC6.64□□□□□ -1.35
CUX1P39880 MIR218-2-201ENST00000385006 110 ntBASIC6.64□□□□□ -1.35
CUX1P39880 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CUX1P39880 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC6.64□□□□□ -1.35
CUX1P39880 AC090246.1-201ENST00000616499 426 ntBASIC6.64□□□□□ -1.35
CUX1P39880 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CUX1P39880 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
CUX1P39880 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC6.63□□□□□ -1.35
CUX1P39880 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC6.63□□□□□ -1.35
CUX1P39880 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC6.63□□□□□ -1.35
CUX1P39880 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
CUX1P39880 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
CUX1P39880 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
CUX1P39880 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC6.63□□□□□ -1.35
CUX1P39880 MIR199A2-201ENST00000385289 110 ntBASIC6.63□□□□□ -1.35
CUX1P39880 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC6.63□□□□□ -1.35
CUX1P39880 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC6.63□□□□□ -1.35
CUX1P39880 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
CUX1P39880 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC6.63□□□□□ -1.35
CUX1P39880 AC106707.2-201ENST00000484182 374 ntBASIC6.63□□□□□ -1.35
CUX1P39880 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC6.63□□□□□ -1.35
CUX1P39880 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC6.63□□□□□ -1.35
CUX1P39880 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC6.63□□□□□ -1.35
CUX1P39880 NPM1P47-201ENST00000560843 856 ntBASIC6.63□□□□□ -1.35
CUX1P39880 AC011471.1-201ENST00000585766 187 ntBASIC6.63□□□□□ -1.35
CUX1P39880 AC008759.1-201ENST00000589783 983 ntBASIC6.63□□□□□ -1.35
CUX1P39880 AL451044.1-201ENST00000604867 238 ntBASIC6.63□□□□□ -1.35
CUX1P39880 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC6.63□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms