Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL18A1P39060 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC5.22□□□□□ -1.57
COL18A1P39060 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
COL18A1P39060 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL18A1P39060 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
COL18A1P39060 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
COL18A1P39060 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC5.22□□□□□ -1.57
COL18A1P39060 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL18A1P39060 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
COL18A1P39060 AP004289.2-201ENST00000444413 1457 ntBASIC5.22□□□□□ -1.57
COL18A1P39060 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.22□□□□□ -1.57
COL18A1P39060 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC5.21□□□□□ -1.57
COL18A1P39060 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC5.21□□□□□ -1.57
COL18A1P39060 UBDP1-202ENST00000457888 382 ntBASIC5.21□□□□□ -1.57
COL18A1P39060 AC006517.1-201ENST00000480485 328 ntBASIC5.21□□□□□ -1.57
COL18A1P39060 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC5.21□□□□□ -1.57
COL18A1P39060 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC5.21□□□□□ -1.57
COL18A1P39060 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC5.21□□□□□ -1.57
COL18A1P39060 HSPD1P15-201ENST00000505573 1122 ntBASIC5.21□□□□□ -1.57
COL18A1P39060 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC5.21□□□□□ -1.57
COL18A1P39060 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC5.21□□□□□ -1.57
COL18A1P39060 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
COL18A1P39060 AC100770.1-201ENST00000532310 322 ntBASIC5.21□□□□□ -1.57
COL18A1P39060 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC5.21□□□□□ -1.57
COL18A1P39060 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC5.21□□□□□ -1.57
COL18A1P39060 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
COL18A1P39060 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
COL18A1P39060 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.21□□□□□ -1.57
COL18A1P39060 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.57
COL18A1P39060 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.21□□□□□ -1.58
COL18A1P39060 AC007529.1-201ENST00000418574 2178 ntBASIC5.21□□□□□ -1.58
COL18A1P39060 MARK2P15-201ENST00000432204 2186 ntBASIC5.21□□□□□ -1.58
COL18A1P39060 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC5.21□□□□□ -1.58
COL18A1P39060 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL18A1P39060 MIR199A2-201ENST00000385289 110 ntBASIC5.21□□□□□ -1.58
COL18A1P39060 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL18A1P39060 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC5.21□□□□□ -1.58
COL18A1P39060 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC5.21□□□□□ -1.58
COL18A1P39060 AC005726.1-201ENST00000494679 427 ntBASIC5.21□□□□□ -1.58
COL18A1P39060 SETP14-201ENST00000497538 873 ntBASIC5.21□□□□□ -1.58
COL18A1P39060 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC5.21□□□□□ -1.58
COL18A1P39060 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5.21□□□□□ -1.58
COL18A1P39060 SNORA70.24-201ENST00000517233 118 ntBASIC5.21□□□□□ -1.58
COL18A1P39060 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC5.21□□□□□ -1.58
COL18A1P39060 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC5.21□□□□□ -1.58
COL18A1P39060 AC037471.2-201ENST00000564941 598 ntBASIC5.21□□□□□ -1.58
COL18A1P39060 AC079171.1-201ENST00000568788 914 ntBASIC5.21□□□□□ -1.58
COL18A1P39060 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC5.21□□□□□ -1.58
COL18A1P39060 AC079684.1-201ENST00000621405 437 ntBASIC5.21□□□□□ -1.58
COL18A1P39060 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.21□□□□□ -1.58
COL18A1P39060 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL18A1P39060 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.21□□□□□ -1.58
COL18A1P39060 AL672167.1-205ENST00000641112 3080 ntBASIC5.21□□□□□ -1.58
COL18A1P39060 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.2□□□□□ -1.58
COL18A1P39060 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL18A1P39060 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
COL18A1P39060 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
COL18A1P39060 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL18A1P39060 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL18A1P39060 MIR490-201ENST00000384865 128 ntBASIC5.2□□□□□ -1.58
COL18A1P39060 AC004448.2-201ENST00000422360 586 ntBASIC5.2□□□□□ -1.58
COL18A1P39060 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC5.2□□□□□ -1.58
COL18A1P39060 AC090602.1-201ENST00000469695 252 ntBASIC5.2□□□□□ -1.58
COL18A1P39060 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC5.2□□□□□ -1.58
COL18A1P39060 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC5.2□□□□□ -1.58
COL18A1P39060 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC5.2□□□□□ -1.58
COL18A1P39060 RPL21P12-201ENST00000559810 515 ntBASIC5.2□□□□□ -1.58
COL18A1P39060 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC5.2□□□□□ -1.58
COL18A1P39060 OR2BH1P-201ENST00000608850 864 ntBASIC5.2□□□□□ -1.58
COL18A1P39060 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.2□□□□□ -1.58
COL18A1P39060 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
COL18A1P39060 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC5.2□□□□□ -1.58
COL18A1P39060 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL18A1P39060 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL18A1P39060 AC023632.6-201ENST00000624338 2177 ntBASIC5.2□□□□□ -1.58
COL18A1P39060 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC5.2□□□□□ -1.58
COL18A1P39060 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
COL18A1P39060 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
COL18A1P39060 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL18A1P39060 ESD-201ENST00000378697 1079 ntTSL 5 BASIC5.19□□□□□ -1.58
COL18A1P39060 MIR195-201ENST00000385194 87 ntBASIC5.19□□□□□ -1.58
COL18A1P39060 AL359643.1-201ENST00000404109 423 ntBASIC5.19□□□□□ -1.58
COL18A1P39060 Z92545.1-201ENST00000411782 234 ntBASIC5.19□□□□□ -1.58
COL18A1P39060 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC5.19□□□□□ -1.58
COL18A1P39060 RPL23AP89-201ENST00000439324 255 ntBASIC5.19□□□□□ -1.58
COL18A1P39060 RPS3AP46-201ENST00000448352 682 ntBASIC5.19□□□□□ -1.58
COL18A1P39060 GAS5-223ENST00000452197 483 ntTSL 3 BASIC5.19□□□□□ -1.58
COL18A1P39060 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC5.19□□□□□ -1.58
COL18A1P39060 AL451044.1-201ENST00000604867 238 ntBASIC5.19□□□□□ -1.58
COL18A1P39060 AL035425.3-201ENST00000564206 4996 ntBASIC5.19□□□□□ -1.58
COL18A1P39060 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
COL18A1P39060 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL18A1P39060 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL18A1P39060 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC5.19□□□□□ -1.58
COL18A1P39060 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL18A1P39060 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
COL18A1P39060 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.19□□□□□ -1.58
COL18A1P39060 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.19□□□□□ -1.58
COL18A1P39060 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.19□□□□□ -1.58
COL18A1P39060 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms