Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RN7SKP284-201ENST00000411002 343 ntBASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 AC092691.2-201ENST00000461787 803 ntBASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 AC018635.1-201ENST00000468292 1030 ntBASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 MIR432-201ENST00000606207 94 ntBASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 AC016957.2-201ENST00000616998 848 ntBASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 AC005086.4-201ENST00000623065 213 ntBASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 AC000374.1-201ENST00000434698 1745 ntBASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 AL159987.2-201ENST00000432754 307 ntBASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 AL451050.1-201ENST00000450126 415 ntBASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 TBCA-203ENST00000517679 545 ntTSL 3 BASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 AC002069.2-201ENST00000603580 883 ntBASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 MIR7975-201ENST00000619350 68 ntBASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 THAP12P5-201ENST00000405864 2275 ntBASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
SHANK3Q9BYB0 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 U1.1-201ENST00000384101 164 ntBASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 PEX12P1-201ENST00000400284 1048 ntBASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 AL445433.1-201ENST00000457507 257 ntBASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 RPL29P14-201ENST00000495837 428 ntBASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 WBP1LP4-201ENST00000505043 344 ntBASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 LEF1-218ENST00000512172 598 ntTSL 2 BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 RNA5SP179-201ENST00000517284 121 ntBASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 AL356274.2-201ENST00000624379 3752 ntBASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 TRIM60P17-201ENST00000415181 719 ntBASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 AL591473.1-201ENST00000464297 313 ntBASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 RN7SL429P-201ENST00000479090 223 ntBASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 RN7SL489P-201ENST00000486185 223 ntBASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 RN7SL327P-201ENST00000488659 223 ntBASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 AL139099.1-201ENST00000497398 403 ntBASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 MIR4433B-201ENST00000581329 102 ntBASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 RN7SL853P-201ENST00000617250 223 ntBASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 AL672167.1-203ENST00000641299 2975 ntBASIC5.28□□□□□ -1.56
SHANK3Q9BYB0 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 AP001642.1-201ENST00000624727 2117 ntBASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 AL606490.9-201ENST00000603331 271 ntBASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 AC073530.2-201ENST00000623987 261 ntBASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SHANK3Q9BYB0 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.26□□□□□ -1.57
SHANK3Q9BYB0 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 125.6 ms