Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
USP39Q53GS9 RPL11P3-201ENST00000395256 523 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 CHMP1B2P-201ENST00000399581 597 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
USP39Q53GS9 EIF1P1-201ENST00000421436 341 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 AL596276.1-201ENST00000434465 418 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 HSD52-202ENST00000436225 772 ntTSL 3 BASIC5.59□□□□□ -1.51
USP39Q53GS9 MTCYBP42-201ENST00000444653 1130 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC5.59□□□□□ -1.51
USP39Q53GS9 AC105399.1-202ENST00000447303 205 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 RBMY2TP-201ENST00000451162 947 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 ZNF114P1-201ENST00000453500 292 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.59□□□□□ -1.51
USP39Q53GS9 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.59□□□□□ -1.51
USP39Q53GS9 AC109462.1-201ENST00000491087 368 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 AL024509.2-201ENST00000493462 493 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 RPS6P4-201ENST00000494693 758 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC5.59□□□□□ -1.51
USP39Q53GS9 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.59□□□□□ -1.51
USP39Q53GS9 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.59□□□□□ -1.51
USP39Q53GS9 AC021087.2-201ENST00000504656 1203 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.59□□□□□ -1.51
USP39Q53GS9 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC5.59□□□□□ -1.51
USP39Q53GS9 GTF2F2P1-201ENST00000511083 675 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 AC091965.2-201ENST00000512324 613 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.59□□□□□ -1.51
USP39Q53GS9 AP001804.2-201ENST00000533932 910 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 AC016957.1-201ENST00000534895 309 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC5.59□□□□□ -1.51
USP39Q53GS9 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC5.59□□□□□ -1.51
USP39Q53GS9 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC5.59□□□□□ -1.51
USP39Q53GS9 ADI1P3-201ENST00000549509 470 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 NMNAT1P5-201ENST00000559657 841 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.59□□□□□ -1.51
USP39Q53GS9 MIR4311-201ENST00000580794 100 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC5.59□□□□□ -1.51
USP39Q53GS9 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC5.59□□□□□ -1.51
USP39Q53GS9 AC022146.1-201ENST00000595307 847 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC5.59□□□□□ -1.51
USP39Q53GS9 AL109618.2-201ENST00000605527 211 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 AL139418.1-201ENST00000613613 177 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 AC025253.1-201ENST00000613623 543 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 AC107075.1-201ENST00000613695 314 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
USP39Q53GS9 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
USP39Q53GS9 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC5.59□□□□□ -1.51
USP39Q53GS9 AC006484.1-201ENST00000435086 1884 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC5.59□□□□□ -1.51
USP39Q53GS9 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
USP39Q53GS9 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
USP39Q53GS9 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
USP39Q53GS9 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
USP39Q53GS9 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
USP39Q53GS9 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
USP39Q53GS9 AC093849.1-201ENST00000563631 2209 ntBASIC5.59□□□□□ -1.52
USP39Q53GS9 AC011933.2-201ENST00000578539 2790 ntBASIC5.59□□□□□ -1.52
USP39Q53GS9 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.59□□□□□ -1.52
USP39Q53GS9 AL353796.1-201ENST00000561542 3241 ntBASIC5.59□□□□□ -1.52
USP39Q53GS9 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
USP39Q53GS9 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
USP39Q53GS9 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
USP39Q53GS9 HSPA8P18-201ENST00000439846 1928 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 AC114774.1-201ENST00000507410 1770 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 AC023421.1-201ENST00000590535 1785 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
USP39Q53GS9 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
USP39Q53GS9 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC5.58□□□□□ -1.52
USP39Q53GS9 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
USP39Q53GS9 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.58□□□□□ -1.52
USP39Q53GS9 RNU6-413P-201ENST00000384115 107 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 AC136624.1-201ENST00000400791 413 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 AC006960.1-201ENST00000419980 153 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 RAC1P8-201ENST00000427086 527 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC5.58□□□□□ -1.52
USP39Q53GS9 AL354941.1-201ENST00000438600 464 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 H2AFZP6-201ENST00000444403 394 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
USP39Q53GS9 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC5.58□□□□□ -1.52
USP39Q53GS9 GTF2IP12-201ENST00000456547 356 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 SETP11-201ENST00000473027 690 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 SNRPCP3-201ENST00000474888 476 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 DUTP1-201ENST00000493631 470 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 SNRPCP2-201ENST00000504370 475 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 AC004069.2-201ENST00000505438 1114 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.58□□□□□ -1.52
USP39Q53GS9 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.58□□□□□ -1.52
USP39Q53GS9 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC5.58□□□□□ -1.52
USP39Q53GS9 MTCYBP19-201ENST00000517463 1124 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 AP000873.5-201ENST00000533906 236 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.58□□□□□ -1.52
USP39Q53GS9 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms