Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL391219.1-201ENST00000422570 483 ntBASIC3.92□□□□□ -1.78
FOXA1P55317 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC3.92□□□□□ -1.78
FOXA1P55317 RPL12P34-201ENST00000424532 479 ntBASIC3.92□□□□□ -1.78
FOXA1P55317 TXNP2-201ENST00000443918 295 ntBASIC3.92□□□□□ -1.78
FOXA1P55317 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
FOXA1P55317 RPS20P4-201ENST00000461659 355 ntBASIC3.92□□□□□ -1.78
FOXA1P55317 RPL29P14-201ENST00000495837 428 ntBASIC3.92□□□□□ -1.78
FOXA1P55317 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.92□□□□□ -1.78
FOXA1P55317 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC3.92□□□□□ -1.78
FOXA1P55317 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC3.92□□□□□ -1.78
FOXA1P55317 AC108475.1-201ENST00000507880 950 ntBASIC3.92□□□□□ -1.78
FOXA1P55317 AC109458.1-201ENST00000508858 316 ntBASIC3.92□□□□□ -1.78
FOXA1P55317 CR383656.6-201ENST00000550518 394 ntBASIC3.92□□□□□ -1.78
FOXA1P55317 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC3.92□□□□□ -1.78
FOXA1P55317 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC3.92□□□□□ -1.78
FOXA1P55317 AC234771.5-201ENST00000600161 514 ntBASIC3.92□□□□□ -1.78
FOXA1P55317 AL137072.1-201ENST00000603444 466 ntBASIC3.92□□□□□ -1.78
FOXA1P55317 AC131238.1-201ENST00000617135 328 ntBASIC3.92□□□□□ -1.78
FOXA1P55317 AL121890.3-201ENST00000618494 516 ntBASIC3.92□□□□□ -1.78
FOXA1P55317 AC011944.2-201ENST00000624440 683 ntBASIC3.92□□□□□ -1.78
FOXA1P55317 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.92□□□□□ -1.78
FOXA1P55317 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.92□□□□□ -1.78
FOXA1P55317 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
FOXA1P55317 AC018529.3-201ENST00000624212 2254 ntBASIC3.92□□□□□ -1.78
FOXA1P55317 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
FOXA1P55317 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
FOXA1P55317 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
FOXA1P55317 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC3.91□□□□□ -1.78
FOXA1P55317 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
FOXA1P55317 RNA5SP366-201ENST00000365454 123 ntBASIC3.91□□□□□ -1.78
FOXA1P55317 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
FOXA1P55317 RPL26P29-201ENST00000415623 438 ntBASIC3.91□□□□□ -1.78
FOXA1P55317 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.91□□□□□ -1.78
FOXA1P55317 AC087650.1-201ENST00000431445 468 ntBASIC3.91□□□□□ -1.78
FOXA1P55317 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC3.91□□□□□ -1.78
FOXA1P55317 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.91□□□□□ -1.78
FOXA1P55317 RPS4XP4-201ENST00000443195 763 ntBASIC3.91□□□□□ -1.78
FOXA1P55317 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC3.91□□□□□ -1.78
FOXA1P55317 AC104306.1-201ENST00000449702 371 ntBASIC3.91□□□□□ -1.78
FOXA1P55317 RPL7AP52-201ENST00000458096 790 ntBASIC3.91□□□□□ -1.78
FOXA1P55317 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC3.91□□□□□ -1.78
FOXA1P55317 AC069499.1-201ENST00000489433 509 ntBASIC3.91□□□□□ -1.78
FOXA1P55317 KATNBL1P4-201ENST00000503545 918 ntBASIC3.91□□□□□ -1.78
FOXA1P55317 AC113430.1-201ENST00000506872 718 ntBASIC3.91□□□□□ -1.78
FOXA1P55317 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC3.91□□□□□ -1.78
FOXA1P55317 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC3.91□□□□□ -1.78
FOXA1P55317 DYNLL1P4-201ENST00000549314 266 ntBASIC3.91□□□□□ -1.78
FOXA1P55317 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.91□□□□□ -1.78
FOXA1P55317 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC3.91□□□□□ -1.78
FOXA1P55317 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC3.91□□□□□ -1.78
FOXA1P55317 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC3.91□□□□□ -1.78
FOXA1P55317 AC068790.4-201ENST00000602474 263 ntBASIC3.91□□□□□ -1.78
FOXA1P55317 AC016252.1-201ENST00000609721 474 ntBASIC3.91□□□□□ -1.78
FOXA1P55317 AC019193.2-201ENST00000610012 634 ntBASIC3.91□□□□□ -1.78
FOXA1P55317 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC3.91□□□□□ -1.78
FOXA1P55317 AC114781.5-201ENST00000615297 108 ntBASIC3.91□□□□□ -1.78
FOXA1P55317 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
FOXA1P55317 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC3.91□□□□□ -1.78
FOXA1P55317 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
FOXA1P55317 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
FOXA1P55317 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
FOXA1P55317 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
FOXA1P55317 OR4K17-201ENST00000315543 1032 ntBASIC3.9□□□□□ -1.79
FOXA1P55317 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
FOXA1P55317 SNORA68.2-201ENST00000391263 128 ntBASIC3.9□□□□□ -1.79
FOXA1P55317 AL050305.1-201ENST00000399993 1230 ntBASIC3.9□□□□□ -1.79
FOXA1P55317 AC010740.1-201ENST00000417035 684 ntBASIC3.9□□□□□ -1.79
FOXA1P55317 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC3.9□□□□□ -1.79
FOXA1P55317 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.9□□□□□ -1.79
FOXA1P55317 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
FOXA1P55317 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.9□□□□□ -1.79
FOXA1P55317 ACTR3P2-201ENST00000439585 1257 ntBASIC3.9□□□□□ -1.79
FOXA1P55317 CEACAMP9-201ENST00000442990 513 ntBASIC3.9□□□□□ -1.79
FOXA1P55317 MTND2P25-201ENST00000449028 610 ntBASIC3.9□□□□□ -1.79
FOXA1P55317 RN7SL303P-201ENST00000469773 251 ntBASIC3.9□□□□□ -1.79
FOXA1P55317 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC3.9□□□□□ -1.79
FOXA1P55317 RPS6P4-201ENST00000494693 758 ntBASIC3.9□□□□□ -1.79
FOXA1P55317 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC3.9□□□□□ -1.79
FOXA1P55317 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC3.9□□□□□ -1.79
FOXA1P55317 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.9□□□□□ -1.79
FOXA1P55317 AL360157.1-201ENST00000565962 87 ntBASIC3.9□□□□□ -1.79
FOXA1P55317 AC025627.2-201ENST00000576220 160 ntBASIC3.9□□□□□ -1.79
FOXA1P55317 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.9□□□□□ -1.79
FOXA1P55317 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.9□□□□□ -1.79
FOXA1P55317 AC124856.1-201ENST00000600819 896 ntBASIC3.9□□□□□ -1.79
FOXA1P55317 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.9□□□□□ -1.79
FOXA1P55317 AL356218.2-201ENST00000605264 187 ntBASIC3.9□□□□□ -1.79
FOXA1P55317 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC3.9□□□□□ -1.79
FOXA1P55317 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
FOXA1P55317 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
FOXA1P55317 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
FOXA1P55317 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.9□□□□□ -1.79
FOXA1P55317 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
FOXA1P55317 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
FOXA1P55317 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
FOXA1P55317 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC3.9□□□□□ -1.79
FOXA1P55317 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA1P55317 LARP1BP1-201ENST00000506036 1359 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC3.89□□□□□ -1.79
FOXA1P55317 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms