Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC5.26□□□□□ -1.57
COL18A1P39060 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.26□□□□□ -1.57
COL18A1P39060 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL18A1P39060 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL18A1P39060 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL18A1P39060 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.25□□□□□ -1.57
COL18A1P39060 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL18A1P39060 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC5.25□□□□□ -1.57
COL18A1P39060 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC5.25□□□□□ -1.57
COL18A1P39060 AC106707.2-201ENST00000484182 374 ntBASIC5.25□□□□□ -1.57
COL18A1P39060 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC5.25□□□□□ -1.57
COL18A1P39060 AC119751.5-201ENST00000514077 770 ntBASIC5.25□□□□□ -1.57
COL18A1P39060 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC5.25□□□□□ -1.57
COL18A1P39060 NPM1P47-201ENST00000560843 856 ntBASIC5.25□□□□□ -1.57
COL18A1P39060 RPL23AP87-202ENST00000573039 466 ntBASIC5.25□□□□□ -1.57
COL18A1P39060 SLC25A36P1-201ENST00000590111 465 ntBASIC5.25□□□□□ -1.57
COL18A1P39060 U3.45-201ENST00000607547 219 ntBASIC5.25□□□□□ -1.57
COL18A1P39060 AL159169.3-201ENST00000608871 561 ntBASIC5.25□□□□□ -1.57
COL18A1P39060 AC074029.4-201ENST00000624796 1859 ntBASIC5.25□□□□□ -1.57
COL18A1P39060 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.25□□□□□ -1.57
COL18A1P39060 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC5.25□□□□□ -1.57
COL18A1P39060 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL18A1P39060 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
COL18A1P39060 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL18A1P39060 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
COL18A1P39060 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5.24□□□□□ -1.57
COL18A1P39060 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
COL18A1P39060 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL18A1P39060 SNORD3H-201ENST00000384486 214 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 AC007068.1-201ENST00000396690 844 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 PEX12P1-201ENST00000400284 1048 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 HMGN2P27-201ENST00000427352 270 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL18A1P39060 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC5.24□□□□□ -1.57
COL18A1P39060 TMX2P1-201ENST00000436507 708 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL18A1P39060 AL031584.1-201ENST00000447169 754 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 CDH12P2-201ENST00000504393 298 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 AC026427.2-201ENST00000506228 536 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.24□□□□□ -1.57
COL18A1P39060 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC5.24□□□□□ -1.57
COL18A1P39060 MIR5187-201ENST00000583479 76 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 AC104662.1-201ENST00000604448 511 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 MIR7975-201ENST00000619350 68 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL18A1P39060 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL18A1P39060 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL18A1P39060 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
COL18A1P39060 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC5.24□□□□□ -1.57
COL18A1P39060 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC5.24□□□□□ -1.57
COL18A1P39060 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.24□□□□□ -1.57
COL18A1P39060 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
COL18A1P39060 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL18A1P39060 AC067945.1-201ENST00000342609 618 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL18A1P39060 MIR1271-201ENST00000408537 86 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 UBE2Q2P12-201ENST00000414573 204 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 RPS17P13-201ENST00000448974 407 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC5.24□□□□□ -1.57
COL18A1P39060 RN7SL293P-201ENST00000481765 281 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 AC107016.1-201ENST00000550463 337 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 LSM3P2-201ENST00000551246 273 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 AC025627.2-201ENST00000576220 160 ntBASIC5.24□□□□□ -1.57
COL18A1P39060 MKKS-203ENST00000609375 882 ntTSL 2 BASIC5.24□□□□□ -1.57
COL18A1P39060 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC5.24□□□□□ -1.57
COL18A1P39060 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
COL18A1P39060 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC5.23□□□□□ -1.57
COL18A1P39060 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
COL18A1P39060 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL18A1P39060 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.23□□□□□ -1.57
COL18A1P39060 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL18A1P39060 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC5.23□□□□□ -1.57
COL18A1P39060 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL18A1P39060 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL18A1P39060 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL18A1P39060 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
COL18A1P39060 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL18A1P39060 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC5.23□□□□□ -1.57
COL18A1P39060 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC5.23□□□□□ -1.57
COL18A1P39060 PGBD4P8-201ENST00000412993 562 ntBASIC5.23□□□□□ -1.57
COL18A1P39060 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.23□□□□□ -1.57
COL18A1P39060 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC5.23□□□□□ -1.57
COL18A1P39060 PDSS1P2-201ENST00000449397 678 ntBASIC5.23□□□□□ -1.57
COL18A1P39060 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC5.23□□□□□ -1.57
COL18A1P39060 CAB39P1-201ENST00000502277 460 ntBASIC5.23□□□□□ -1.57
COL18A1P39060 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC5.23□□□□□ -1.57
COL18A1P39060 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.23□□□□□ -1.57
COL18A1P39060 AC010503.3-201ENST00000594355 540 ntBASIC5.23□□□□□ -1.57
COL18A1P39060 AC097505.1-201ENST00000610199 565 ntBASIC5.23□□□□□ -1.57
COL18A1P39060 AL442067.2-201ENST00000614033 363 ntBASIC5.23□□□□□ -1.57
COL18A1P39060 AC006971.1-201ENST00000407916 4486 ntBASIC5.23□□□□□ -1.57
COL18A1P39060 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL18A1P39060 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL18A1P39060 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC5.22□□□□□ -1.57
COL18A1P39060 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC5.22□□□□□ -1.57
COL18A1P39060 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL18A1P39060 MIR218-2-201ENST00000385006 110 ntBASIC5.22□□□□□ -1.57
COL18A1P39060 MIR634-201ENST00000385208 97 ntBASIC5.22□□□□□ -1.57
COL18A1P39060 RPS23P10-201ENST00000416185 486 ntBASIC5.22□□□□□ -1.57
COL18A1P39060 AC092647.1-201ENST00000420654 287 ntBASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms