Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC4.98□□□□□ -1.61
SCN4AP35499 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.98□□□□□ -1.61
SCN4AP35499 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC4.98□□□□□ -1.61
SCN4AP35499 AC023389.2-201ENST00000580031 955 ntBASIC4.98□□□□□ -1.61
SCN4AP35499 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.98□□□□□ -1.61
SCN4AP35499 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.98□□□□□ -1.61
SCN4AP35499 OR2BH1P-201ENST00000608850 864 ntBASIC4.98□□□□□ -1.61
SCN4AP35499 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SCN4AP35499 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
SCN4AP35499 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.98□□□□□ -1.61
SCN4AP35499 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SCN4AP35499 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
SCN4AP35499 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SCN4AP35499 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SCN4AP35499 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.98□□□□□ -1.61
SCN4AP35499 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC4.98□□□□□ -1.61
SCN4AP35499 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
SCN4AP35499 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
SCN4AP35499 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.97□□□□□ -1.61
SCN4AP35499 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC4.97□□□□□ -1.61
SCN4AP35499 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SCN4AP35499 AL445433.1-201ENST00000457507 257 ntBASIC4.97□□□□□ -1.61
SCN4AP35499 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.97□□□□□ -1.61
SCN4AP35499 RNA5SP446-201ENST00000515955 82 ntBASIC4.97□□□□□ -1.61
SCN4AP35499 YPEL5P3-201ENST00000547227 352 ntBASIC4.97□□□□□ -1.61
SCN4AP35499 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.97□□□□□ -1.61
SCN4AP35499 AC010201.1-201ENST00000605051 540 ntBASIC4.97□□□□□ -1.61
SCN4AP35499 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.97□□□□□ -1.61
SCN4AP35499 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SCN4AP35499 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SCN4AP35499 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.97□□□□□ -1.61
SCN4AP35499 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SCN4AP35499 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.97□□□□□ -1.61
SCN4AP35499 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SCN4AP35499 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC4.97□□□□□ -1.61
SCN4AP35499 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SCN4AP35499 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC4.97□□□□□ -1.61
SCN4AP35499 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SCN4AP35499 RNA5SP22-201ENST00000365393 109 ntBASIC4.97□□□□□ -1.61
SCN4AP35499 AL159987.2-201ENST00000432754 307 ntBASIC4.97□□□□□ -1.61
SCN4AP35499 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC4.97□□□□□ -1.61
SCN4AP35499 CYCSP32-201ENST00000440548 321 ntBASIC4.97□□□□□ -1.61
SCN4AP35499 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.97□□□□□ -1.61
SCN4AP35499 PDSS1P2-201ENST00000449397 678 ntBASIC4.97□□□□□ -1.61
SCN4AP35499 AC022795.1-201ENST00000473808 480 ntBASIC4.97□□□□□ -1.61
SCN4AP35499 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SCN4AP35499 AL358832.1-201ENST00000497800 389 ntBASIC4.97□□□□□ -1.61
SCN4AP35499 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.97□□□□□ -1.61
SCN4AP35499 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.97□□□□□ -1.61
SCN4AP35499 GMPSP1-201ENST00000514075 579 ntBASIC4.97□□□□□ -1.61
SCN4AP35499 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.97□□□□□ -1.61
SCN4AP35499 MIR5195-201ENST00000583555 115 ntBASIC4.97□□□□□ -1.61
SCN4AP35499 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.97□□□□□ -1.61
SCN4AP35499 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.97□□□□□ -1.61
SCN4AP35499 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SCN4AP35499 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SCN4AP35499 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SCN4AP35499 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
SCN4AP35499 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
SCN4AP35499 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SCN4AP35499 MTND5P1-201ENST00000445440 1375 ntBASIC4.96□□□□□ -1.62
SCN4AP35499 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
SCN4AP35499 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
SCN4AP35499 AL356968.2-201ENST00000412769 1257 ntBASIC4.96□□□□□ -1.62
SCN4AP35499 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC4.96□□□□□ -1.62
SCN4AP35499 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC4.96□□□□□ -1.62
SCN4AP35499 PRDX3P3-201ENST00000447765 522 ntBASIC4.96□□□□□ -1.62
SCN4AP35499 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.96□□□□□ -1.62
SCN4AP35499 RPL23AP97-201ENST00000568955 471 ntBASIC4.96□□□□□ -1.62
SCN4AP35499 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.96□□□□□ -1.62
SCN4AP35499 AC234782.5-201ENST00000617723 324 ntBASIC4.96□□□□□ -1.62
SCN4AP35499 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.96□□□□□ -1.62
SCN4AP35499 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.96□□□□□ -1.62
SCN4AP35499 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.96□□□□□ -1.62
SCN4AP35499 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.96□□□□□ -1.62
SCN4AP35499 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
SCN4AP35499 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.96□□□□□ -1.62
SCN4AP35499 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SCN4AP35499 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
SCN4AP35499 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SCN4AP35499 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SCN4AP35499 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.95□□□□□ -1.62
SCN4AP35499 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC4.95□□□□□ -1.62
SCN4AP35499 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.95□□□□□ -1.62
SCN4AP35499 Y_RNA.111-201ENST00000363248 100 ntBASIC4.95□□□□□ -1.62
SCN4AP35499 RPL7P22-201ENST00000466005 733 ntBASIC4.95□□□□□ -1.62
SCN4AP35499 AC018635.1-201ENST00000468292 1030 ntBASIC4.95□□□□□ -1.62
SCN4AP35499 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.95□□□□□ -1.62
SCN4AP35499 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SCN4AP35499 AC016550.3-201ENST00000515706 767 ntBASIC4.95□□□□□ -1.62
SCN4AP35499 OR8I1P-201ENST00000529291 931 ntBASIC4.95□□□□□ -1.62
SCN4AP35499 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.95□□□□□ -1.62
SCN4AP35499 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.95□□□□□ -1.62
SCN4AP35499 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.95□□□□□ -1.62
SCN4AP35499 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC4.95□□□□□ -1.62
SCN4AP35499 HMGB2P1-201ENST00000591146 634 ntBASIC4.95□□□□□ -1.62
SCN4AP35499 IMMP1LP1-201ENST00000605170 488 ntBASIC4.95□□□□□ -1.62
SCN4AP35499 AL391497.1-201ENST00000608671 547 ntBASIC4.95□□□□□ -1.62
SCN4AP35499 AL121890.2-201ENST00000617644 465 ntBASIC4.95□□□□□ -1.62
SCN4AP35499 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 133.9 ms