Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 EIF2S2P5-201ENST00000457635 968 ntBASIC4.16□□□□□ -1.74
SDC1P18827 CABYRP1-201ENST00000465493 1045 ntBASIC4.16□□□□□ -1.74
SDC1P18827 RN7SL354P-201ENST00000469282 294 ntBASIC4.16□□□□□ -1.74
SDC1P18827 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.16□□□□□ -1.74
SDC1P18827 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC4.16□□□□□ -1.74
SDC1P18827 AC093663.2-201ENST00000484625 313 ntBASIC4.16□□□□□ -1.74
SDC1P18827 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC4.16□□□□□ -1.74
SDC1P18827 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.16□□□□□ -1.74
SDC1P18827 HAUS1P1-201ENST00000505275 832 ntBASIC4.16□□□□□ -1.74
SDC1P18827 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SDC1P18827 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC4.16□□□□□ -1.74
SDC1P18827 OR8K2P-201ENST00000524645 927 ntBASIC4.16□□□□□ -1.74
SDC1P18827 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.16□□□□□ -1.74
SDC1P18827 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC4.16□□□□□ -1.74
SDC1P18827 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SDC1P18827 CYP4A43P-201ENST00000568156 121 ntBASIC4.16□□□□□ -1.74
SDC1P18827 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SDC1P18827 AC079587.1-201ENST00000603846 277 ntBASIC4.16□□□□□ -1.74
SDC1P18827 AC115286.1-201ENST00000604298 434 ntBASIC4.16□□□□□ -1.74
SDC1P18827 AC096553.1-201ENST00000605169 829 ntBASIC4.16□□□□□ -1.74
SDC1P18827 AL450270.1-201ENST00000606160 391 ntBASIC4.16□□□□□ -1.74
SDC1P18827 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
SDC1P18827 AC007546.1-201ENST00000619452 559 ntBASIC4.16□□□□□ -1.74
SDC1P18827 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.16□□□□□ -1.74
SDC1P18827 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC4.16□□□□□ -1.74
SDC1P18827 FP325313.1-201ENST00000638228 703 ntBASIC4.16□□□□□ -1.74
SDC1P18827 AC119674.1-212ENST00000641155 993 ntBASIC4.16□□□□□ -1.74
SDC1P18827 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
SDC1P18827 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.16□□□□□ -1.74
SDC1P18827 CASC19-284ENST00000642142 1868 ntBASIC4.15□□□□□ -1.74
SDC1P18827 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.15□□□□□ -1.74
SDC1P18827 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
SDC1P18827 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.15□□□□□ -1.74
SDC1P18827 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
SDC1P18827 AC008033.1-201ENST00000216407 1162 ntBASIC4.15□□□□□ -1.75
SDC1P18827 RNA5SP52-201ENST00000362448 134 ntBASIC4.15□□□□□ -1.75
SDC1P18827 RNA5SP28-201ENST00000363841 119 ntBASIC4.15□□□□□ -1.75
SDC1P18827 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.75
SDC1P18827 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
SDC1P18827 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.15□□□□□ -1.75
SDC1P18827 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.15□□□□□ -1.75
SDC1P18827 USP9YP9-201ENST00000429406 715 ntBASIC4.15□□□□□ -1.75
SDC1P18827 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC4.15□□□□□ -1.75
SDC1P18827 HMGB3P9-201ENST00000441799 583 ntBASIC4.15□□□□□ -1.75
SDC1P18827 AC022431.1-201ENST00000450941 438 ntBASIC4.15□□□□□ -1.75
SDC1P18827 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC4.15□□□□□ -1.75
SDC1P18827 RPL35AP15-201ENST00000468042 339 ntBASIC4.15□□□□□ -1.75
SDC1P18827 RN7SL812P-201ENST00000493791 279 ntBASIC4.15□□□□□ -1.75
SDC1P18827 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
SDC1P18827 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.15□□□□□ -1.75
SDC1P18827 AC006499.6-201ENST00000511169 607 ntBASIC4.15□□□□□ -1.75
SDC1P18827 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC4.15□□□□□ -1.75
SDC1P18827 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC4.15□□□□□ -1.75
SDC1P18827 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.15□□□□□ -1.75
SDC1P18827 IFITM8P-201ENST00000522529 394 ntBASIC4.15□□□□□ -1.75
SDC1P18827 OR5BC1P-201ENST00000529327 739 ntBASIC4.15□□□□□ -1.75
SDC1P18827 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC4.15□□□□□ -1.75
SDC1P18827 AC021483.2-201ENST00000567415 758 ntBASIC4.15□□□□□ -1.75
SDC1P18827 MIR4480-201ENST00000582492 71 ntBASIC4.15□□□□□ -1.75
SDC1P18827 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.15□□□□□ -1.75
SDC1P18827 AC004775.1-201ENST00000607389 753 ntBASIC4.15□□□□□ -1.75
SDC1P18827 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.15□□□□□ -1.75
SDC1P18827 AL356094.1-201ENST00000624663 1212 ntBASIC4.15□□□□□ -1.75
SDC1P18827 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.15□□□□□ -1.75
SDC1P18827 NOL8P1-201ENST00000508336 3529 ntBASIC4.15□□□□□ -1.75
SDC1P18827 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
SDC1P18827 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
SDC1P18827 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
SDC1P18827 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
SDC1P18827 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SDC1P18827 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.75
SDC1P18827 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SDC1P18827 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
SDC1P18827 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
SDC1P18827 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.14□□□□□ -1.75
SDC1P18827 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SDC1P18827 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.14□□□□□ -1.75
SDC1P18827 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SDC1P18827 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SDC1P18827 LAP3P1-201ENST00000403648 294 ntBASIC4.14□□□□□ -1.75
SDC1P18827 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.14□□□□□ -1.75
SDC1P18827 AC007394.1-201ENST00000421941 531 ntBASIC4.14□□□□□ -1.75
SDC1P18827 MORF4L1P7-201ENST00000426038 703 ntBASIC4.14□□□□□ -1.75
SDC1P18827 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.14□□□□□ -1.75
SDC1P18827 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.14□□□□□ -1.75
SDC1P18827 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.14□□□□□ -1.75
SDC1P18827 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC4.14□□□□□ -1.75
SDC1P18827 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.14□□□□□ -1.75
SDC1P18827 AL590762.3-201ENST00000436372 640 ntBASIC4.14□□□□□ -1.75
SDC1P18827 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.14□□□□□ -1.75
SDC1P18827 AC007000.2-201ENST00000442564 487 ntBASIC4.14□□□□□ -1.75
SDC1P18827 CASP3P1-201ENST00000446037 609 ntBASIC4.14□□□□□ -1.75
SDC1P18827 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC4.14□□□□□ -1.75
SDC1P18827 HMGB1P5-202ENST00000451497 985 ntBASIC4.14□□□□□ -1.75
SDC1P18827 RPL21P126-201ENST00000470049 478 ntBASIC4.14□□□□□ -1.75
SDC1P18827 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC4.14□□□□□ -1.75
SDC1P18827 AC107398.1-201ENST00000486904 505 ntBASIC4.14□□□□□ -1.75
SDC1P18827 AC108145.1-201ENST00000503770 153 ntBASIC4.14□□□□□ -1.75
SDC1P18827 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.14□□□□□ -1.75
SDC1P18827 HAUS1P3-201ENST00000523909 662 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms