Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXD4P09016 HAUS1P1-201ENST00000505275 832 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXD4P09016 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXD4P09016 FABP5P6-201ENST00000510588 409 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 HMGB1P47-201ENST00000511281 589 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 RNA5SP392-201ENST00000516905 112 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXD4P09016 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.28□□□□□ -1.72
HOXD4P09016 AP003102.1-201ENST00000525638 661 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXD4P09016 AL049839.1-201ENST00000556151 657 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXD4P09016 BNIP3P27-201ENST00000599991 412 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 AC242628.1-201ENST00000606810 391 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXD4P09016 AL445423.1-201ENST00000609941 536 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXD4P09016 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXD4P09016 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXD4P09016 AC010928.1-201ENST00000592477 1447 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 SPATA2P1-201ENST00000431223 2055 ntBASIC4.28□□□□□ -1.72
HOXD4P09016 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.28□□□□□ -1.73
HOXD4P09016 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXD4P09016 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
HOXD4P09016 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXD4P09016 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXD4P09016 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXD4P09016 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXD4P09016 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
HOXD4P09016 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXD4P09016 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXD4P09016 RNU1-108P-201ENST00000362556 161 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 RNA5SP513-201ENST00000364648 118 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 RNA5SP397-201ENST00000391323 118 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 ST13P16-201ENST00000401760 781 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 AL049697.2-201ENST00000403708 294 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 AL136131.1-201ENST00000406079 803 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXD4P09016 AL355143.1-201ENST00000407101 841 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.27□□□□□ -1.73
HOXD4P09016 TMBIM7P-201ENST00000418074 855 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 MTCYBP7-201ENST00000419540 1134 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXD4P09016 AC004448.2-201ENST00000422360 586 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 RPL23AP1-201ENST00000428990 471 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 RPL12P28-201ENST00000430852 489 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXD4P09016 AL121877.1-201ENST00000453704 622 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 AL356981.1-201ENST00000454879 684 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXD4P09016 OR52A4P-201ENST00000472867 958 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 AC092902.1-201ENST00000486999 259 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.27□□□□□ -1.73
HOXD4P09016 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXD4P09016 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXD4P09016 RPL23AP53-201ENST00000521854 457 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 AC090281.1-201ENST00000523019 276 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXD4P09016 MTND5P21-201ENST00000531961 522 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXD4P09016 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXD4P09016 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXD4P09016 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXD4P09016 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXD4P09016 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXD4P09016 AC074050.1-201ENST00000563247 211 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXD4P09016 AL590392.1-201ENST00000604960 446 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 KATNBL1P5-201ENST00000605015 517 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 AL356218.2-201ENST00000605264 187 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 AC110792.4-201ENST00000609843 298 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXD4P09016 RMST_9.1-201ENST00000619945 193 ntBASIC4.27□□□□□ -1.73
HOXD4P09016 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXD4P09016 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXD4P09016 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXD4P09016 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXD4P09016 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.27□□□□□ -1.73
HOXD4P09016 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXD4P09016 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
HOXD4P09016 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXD4P09016 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXD4P09016 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXD4P09016 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXD4P09016 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXD4P09016 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
HOXD4P09016 AL442639.1-201ENST00000625030 1899 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXD4P09016 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXD4P09016 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.26□□□□□ -1.73
HOXD4P09016 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXD4P09016 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXD4P09016 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXD4P09016 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
HOXD4P09016 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXD4P09016 OR56B2P-202ENST00000641377 2453 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AC092435.4-201ENST00000623012 4159 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 144.6 ms