Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU6-416P-201ENST00000516265 103 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 RNU6-941P-201ENST00000516346 108 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AC020937.1-201ENST00000519677 1013 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AC010306.1-201ENST00000523223 1117 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AC087373.1-201ENST00000524920 491 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AP001317.1-201ENST00000531194 960 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AC092747.2-201ENST00000545069 983 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AC008015.1-201ENST00000555505 465 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 NIFKP8-201ENST00000560500 874 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AC069545.1-201ENST00000605671 358 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 Z95327.3-201ENST00000610385 572 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AL353726.1-201ENST00000614041 1000 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AC023509.5-201ENST00000617434 807 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AP000676.3-201ENST00000623299 569 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 OR52B5P-202ENST00000641118 1110 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
PTCHD3Q3KNS1 AC011493.1-201ENST00000596753 1632 ntBASIC5.15□□□□□ -1.58
PTCHD3Q3KNS1 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
PTCHD3Q3KNS1 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
PTCHD3Q3KNS1 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
PTCHD3Q3KNS1 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
PTCHD3Q3KNS1 SGO1P1-201ENST00000603525 1447 ntBASIC5.15□□□□□ -1.58
PTCHD3Q3KNS1 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
PTCHD3Q3KNS1 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
PTCHD3Q3KNS1 AL034549.2-201ENST00000618285 3373 ntBASIC5.15□□□□□ -1.58
PTCHD3Q3KNS1 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.15□□□□□ -1.58
PTCHD3Q3KNS1 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.15□□□□□ -1.58
PTCHD3Q3KNS1 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
PTCHD3Q3KNS1 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
PTCHD3Q3KNS1 AC120338.1-201ENST00000625074 1541 ntBASIC5.15□□□□□ -1.58
PTCHD3Q3KNS1 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 U3.2-201ENST00000362981 210 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 SNORA58B-201ENST00000364259 136 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 RN7SKP153-201ENST00000365026 316 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 BMS1P3-201ENST00000372011 932 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 OR1L1-202ENST00000373686 1083 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 MIR16-1-201ENST00000385271 89 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 RN7SKP273-201ENST00000411392 314 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AC006960.1-201ENST00000419980 153 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AC007435.1-201ENST00000421086 415 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 MTND4P32-201ENST00000437189 1237 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 USP9YP22-201ENST00000438971 294 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AC104634.1-201ENST00000452720 462 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AL133244.1-201ENST00000456007 258 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AC079168.1-201ENST00000458741 345 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 RN7SL222P-201ENST00000476452 299 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 RPL7P41-201ENST00000485823 957 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AC093270.2-201ENST00000486157 792 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AC104971.1-201ENST00000495117 578 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 OR5BM1P-201ENST00000512021 366 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AP000619.3-201ENST00000535634 1127 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 OR11J2P-201ENST00000555298 907 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 DUXAP1-201ENST00000556632 463 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AC090888.1-201ENST00000561335 1141 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 RPL10P14-201ENST00000565265 298 ntBASIC5.15□□□□□ -1.59
PTCHD3Q3KNS1 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms