Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH3P20585 AP003066.2-201ENST00000529375 555 ntBASIC4.67□□□□□ -1.66
MSH3P20585 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC4.67□□□□□ -1.66
MSH3P20585 AC079075.1-201ENST00000559543 878 ntBASIC4.67□□□□□ -1.66
MSH3P20585 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH3P20585 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC4.67□□□□□ -1.66
MSH3P20585 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC4.67□□□□□ -1.66
MSH3P20585 AC090666.1-201ENST00000578241 445 ntBASIC4.67□□□□□ -1.66
MSH3P20585 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH3P20585 IMMP1LP1-201ENST00000605170 488 ntBASIC4.67□□□□□ -1.66
MSH3P20585 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.67□□□□□ -1.66
MSH3P20585 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC4.67□□□□□ -1.66
MSH3P20585 AC093875.1-201ENST00000623688 504 ntBASIC4.67□□□□□ -1.66
MSH3P20585 AC021106.3-201ENST00000623925 531 ntBASIC4.67□□□□□ -1.66
MSH3P20585 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.67□□□□□ -1.66
MSH3P20585 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
MSH3P20585 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
MSH3P20585 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
MSH3P20585 AC092435.4-201ENST00000623012 4159 ntBASIC4.67□□□□□ -1.66
MSH3P20585 AC120338.1-201ENST00000625074 1541 ntBASIC4.67□□□□□ -1.66
MSH3P20585 HSPA8P17-201ENST00000427029 1382 ntBASIC4.66□□□□□ -1.66
MSH3P20585 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
MSH3P20585 AC104118.1-201ENST00000607625 1589 ntBASIC4.66□□□□□ -1.66
MSH3P20585 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
MSH3P20585 UGT2B26P-201ENST00000508672 1613 ntBASIC4.66□□□□□ -1.66
MSH3P20585 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.66□□□□□ -1.66
MSH3P20585 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.66□□□□□ -1.66
MSH3P20585 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
MSH3P20585 RN7SKP115-201ENST00000363177 317 ntBASIC4.66□□□□□ -1.66
MSH3P20585 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
MSH3P20585 SNORA68.2-201ENST00000391263 128 ntBASIC4.66□□□□□ -1.66
MSH3P20585 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSH3P20585 AL080315.1-201ENST00000406055 466 ntBASIC4.66□□□□□ -1.66
MSH3P20585 MTATP6P31-201ENST00000406985 692 ntBASIC4.66□□□□□ -1.66
MSH3P20585 RN7SKP199-201ENST00000410325 305 ntBASIC4.66□□□□□ -1.66
MSH3P20585 AL158825.1-201ENST00000414735 521 ntBASIC4.66□□□□□ -1.66
MSH3P20585 RPL23AP4-201ENST00000427757 463 ntBASIC4.66□□□□□ -1.66
MSH3P20585 USP9YP9-201ENST00000429406 715 ntBASIC4.66□□□□□ -1.66
MSH3P20585 TRBV26OR9-2-201ENST00000432077 293 ntBASIC4.66□□□□□ -1.66
MSH3P20585 AC093716.1-201ENST00000435923 377 ntBASIC4.66□□□□□ -1.66
MSH3P20585 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.66□□□□□ -1.66
MSH3P20585 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC4.66□□□□□ -1.66
MSH3P20585 AL133244.1-201ENST00000456007 258 ntBASIC4.66□□□□□ -1.66
MSH3P20585 AC025164.1-201ENST00000496249 478 ntBASIC4.66□□□□□ -1.66
MSH3P20585 GTF2IP9-201ENST00000502460 301 ntBASIC4.66□□□□□ -1.66
MSH3P20585 TRAV31-201ENST00000502780 342 ntBASIC4.66□□□□□ -1.66
MSH3P20585 OR5H3P-201ENST00000502817 919 ntBASIC4.66□□□□□ -1.66
MSH3P20585 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.66□□□□□ -1.66
MSH3P20585 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
MSH3P20585 MTCYBP19-201ENST00000517463 1124 ntBASIC4.66□□□□□ -1.66
MSH3P20585 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.66□□□□□ -1.66
MSH3P20585 AC087888.1-201ENST00000550884 1254 ntBASIC4.66□□□□□ -1.66
MSH3P20585 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.66□□□□□ -1.66
MSH3P20585 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.66□□□□□ -1.66
MSH3P20585 AL158211.1-201ENST00000566763 763 ntBASIC4.66□□□□□ -1.66
MSH3P20585 AC068020.1-201ENST00000594215 661 ntBASIC4.66□□□□□ -1.66
MSH3P20585 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.66□□□□□ -1.66
MSH3P20585 AC130352.1-201ENST00000602979 661 ntBASIC4.66□□□□□ -1.66
MSH3P20585 AC023762.1-201ENST00000603280 584 ntBASIC4.66□□□□□ -1.66
MSH3P20585 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC4.66□□□□□ -1.66
MSH3P20585 AC021851.1-201ENST00000608537 1082 ntBASIC4.66□□□□□ -1.66
MSH3P20585 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.66□□□□□ -1.66
MSH3P20585 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC4.66□□□□□ -1.66
MSH3P20585 AC090506.2-201ENST00000624521 419 ntBASIC4.66□□□□□ -1.66
MSH3P20585 AC099654.9-201ENST00000637055 678 ntBASIC4.66□□□□□ -1.66
MSH3P20585 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.66□□□□□ -1.66
MSH3P20585 AC009452.1-201ENST00000640823 606 ntBASIC4.66□□□□□ -1.66
MSH3P20585 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.66□□□□□ -1.66
MSH3P20585 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSH3P20585 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSH3P20585 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.66□□□□□ -1.66
MSH3P20585 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.66□□□□□ -1.66
MSH3P20585 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.66□□□□□ -1.66
MSH3P20585 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
MSH3P20585 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSH3P20585 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.66□□□□□ -1.66
MSH3P20585 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSH3P20585 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.65□□□□□ -1.66
MSH3P20585 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
MSH3P20585 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.65□□□□□ -1.66
MSH3P20585 MAPK10-303ENST00000641324 3959 ntBASIC4.65□□□□□ -1.66
MSH3P20585 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
MSH3P20585 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
MSH3P20585 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
MSH3P20585 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
MSH3P20585 AP001273.1-201ENST00000624493 3152 ntBASIC4.65□□□□□ -1.67
MSH3P20585 AL590240.1-201ENST00000334118 313 ntBASIC4.65□□□□□ -1.67
MSH3P20585 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
MSH3P20585 RNU6-354P-201ENST00000383862 107 ntBASIC4.65□□□□□ -1.67
MSH3P20585 RNU6-610P-201ENST00000384264 107 ntBASIC4.65□□□□□ -1.67
MSH3P20585 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
MSH3P20585 RNU6-796P-201ENST00000391086 107 ntBASIC4.65□□□□□ -1.67
MSH3P20585 Z98745.1-201ENST00000402553 494 ntBASIC4.65□□□□□ -1.67
MSH3P20585 ARL4AP5-201ENST00000404372 599 ntBASIC4.65□□□□□ -1.67
MSH3P20585 AL136131.1-201ENST00000406079 803 ntBASIC4.65□□□□□ -1.67
MSH3P20585 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.65□□□□□ -1.67
MSH3P20585 RBMY2KP-201ENST00000418221 992 ntBASIC4.65□□□□□ -1.67
MSH3P20585 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
MSH3P20585 RPA2P2-201ENST00000419698 796 ntBASIC4.65□□□□□ -1.67
MSH3P20585 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms