Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RNU1-44P-201ENST00000384453 163 ntBASIC5.79□□□□□ -1.48
COL3A1P02461 MTND4P22-201ENST00000413116 1169 ntBASIC5.79□□□□□ -1.48
COL3A1P02461 AC011933.1-201ENST00000413334 321 ntBASIC5.79□□□□□ -1.48
COL3A1P02461 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC5.79□□□□□ -1.48
COL3A1P02461 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.79□□□□□ -1.48
COL3A1P02461 RPL10P17-201ENST00000453852 316 ntBASIC5.79□□□□□ -1.48
COL3A1P02461 AC116533.1-201ENST00000459748 321 ntBASIC5.79□□□□□ -1.48
COL3A1P02461 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC5.79□□□□□ -1.48
COL3A1P02461 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC5.79□□□□□ -1.48
COL3A1P02461 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC5.79□□□□□ -1.48
COL3A1P02461 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC5.79□□□□□ -1.48
COL3A1P02461 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC5.79□□□□□ -1.48
COL3A1P02461 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.79□□□□□ -1.48
COL3A1P02461 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC5.79□□□□□ -1.48
COL3A1P02461 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC5.79□□□□□ -1.48
COL3A1P02461 YWHAZP1-201ENST00000556286 722 ntBASIC5.79□□□□□ -1.48
COL3A1P02461 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC5.79□□□□□ -1.48
COL3A1P02461 AL161729.3-201ENST00000603533 673 ntBASIC5.79□□□□□ -1.48
COL3A1P02461 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.79□□□□□ -1.48
COL3A1P02461 AC100871.1-201ENST00000507871 1456 ntBASIC5.79□□□□□ -1.48
COL3A1P02461 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL3A1P02461 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL3A1P02461 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.79□□□□□ -1.48
COL3A1P02461 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL3A1P02461 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL3A1P02461 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL3A1P02461 LARP1BP1-201ENST00000506036 1359 ntBASIC5.79□□□□□ -1.48
COL3A1P02461 AC096656.1-201ENST00000623826 1364 ntBASIC5.79□□□□□ -1.48
COL3A1P02461 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL3A1P02461 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL3A1P02461 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL3A1P02461 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.78□□□□□ -1.48
COL3A1P02461 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL3A1P02461 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL3A1P02461 MIR383-201ENST00000362257 73 ntBASIC5.78□□□□□ -1.48
COL3A1P02461 RNU6-650P-201ENST00000365658 111 ntBASIC5.78□□□□□ -1.48
COL3A1P02461 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL3A1P02461 RPS27AP11-201ENST00000402798 447 ntBASIC5.78□□□□□ -1.48
COL3A1P02461 RN7SKP235-201ENST00000410662 305 ntBASIC5.78□□□□□ -1.48
COL3A1P02461 AC069282.1-201ENST00000411911 526 ntBASIC5.78□□□□□ -1.48
COL3A1P02461 AL356968.2-201ENST00000412769 1257 ntBASIC5.78□□□□□ -1.48
COL3A1P02461 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC5.78□□□□□ -1.48
COL3A1P02461 AC004975.1-201ENST00000428733 208 ntBASIC5.78□□□□□ -1.48
COL3A1P02461 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC5.78□□□□□ -1.48
COL3A1P02461 RRM2P4-201ENST00000441721 562 ntBASIC5.78□□□□□ -1.48
COL3A1P02461 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.78□□□□□ -1.48
COL3A1P02461 MTND1P29-201ENST00000448112 647 ntBASIC5.78□□□□□ -1.48
COL3A1P02461 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.78□□□□□ -1.48
COL3A1P02461 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC5.78□□□□□ -1.48
COL3A1P02461 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC5.78□□□□□ -1.48
COL3A1P02461 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.78□□□□□ -1.48
COL3A1P02461 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC5.78□□□□□ -1.48
COL3A1P02461 MIR4675-201ENST00000577898 77 ntBASIC5.78□□□□□ -1.48
COL3A1P02461 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC5.78□□□□□ -1.48
COL3A1P02461 AL671309.1-201ENST00000603750 544 ntBASIC5.78□□□□□ -1.48
COL3A1P02461 SNORD91B-202ENST00000608459 222 ntBASIC5.78□□□□□ -1.48
COL3A1P02461 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC5.78□□□□□ -1.48
COL3A1P02461 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL3A1P02461 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.78□□□□□ -1.48
COL3A1P02461 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL3A1P02461 AL672167.1-205ENST00000641112 3080 ntBASIC5.78□□□□□ -1.48
COL3A1P02461 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL3A1P02461 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.78□□□□□ -1.48
COL3A1P02461 AC093536.2-201ENST00000565257 1406 ntBASIC5.78□□□□□ -1.48
COL3A1P02461 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
COL3A1P02461 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.78□□□□□ -1.48
COL3A1P02461 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC5.78□□□□□ -1.48
COL3A1P02461 RNU1-14P-201ENST00000362759 152 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 RNU1-13P-201ENST00000384499 162 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 AC004448.2-201ENST00000422360 586 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 MTND4P32-201ENST00000437189 1237 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL3A1P02461 AL691517.1-201ENST00000440833 1235 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 RPS27AP15-201ENST00000447672 466 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 AC010618.1-201ENST00000469924 477 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 UQCRHP4-201ENST00000471686 272 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC5.77□□□□□ -1.49
COL3A1P02461 RNA5SP497-201ENST00000516081 97 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 RNA5SP519-201ENST00000516480 119 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC5.77□□□□□ -1.49
COL3A1P02461 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC5.77□□□□□ -1.49
COL3A1P02461 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC5.77□□□□□ -1.49
COL3A1P02461 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC5.77□□□□□ -1.49
COL3A1P02461 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC5.77□□□□□ -1.49
COL3A1P02461 PSMB7P1-201ENST00000556349 514 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 PARP1P2-201ENST00000556806 195 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 BNIP3P5-201ENST00000562290 498 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC5.77□□□□□ -1.49
COL3A1P02461 AC005776.1-201ENST00000603164 290 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 AL591034.3-201ENST00000605511 685 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 AL109618.2-201ENST00000605527 211 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 AC016590.3-201ENST00000611171 753 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 AC091046.3-201ENST00000631455 1574 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.77□□□□□ -1.49
COL3A1P02461 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL3A1P02461 MTND4P4-201ENST00000439033 1366 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 DDX43P2-201ENST00000604753 1354 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL3A1P02461 AP005435.3-201ENST00000531260 3198 ntBASIC5.77□□□□□ -1.49
COL3A1P02461 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms